Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0633 ATGATTCTCATGGCCTCGTCATCATCTTCTTCTTCTCTCAAGTTTACAGTTCGAAGATGCCAACCGCAGCTGGTGCCTCCTGCCATCCCCACTCCTCGTGAAGTTAAGCCACTTTCCGACATTGATGATCAAGAAGCCCTGCGTCTCCACGTTGCGATGGTACAAATTTATCCAAAGCATGCATCAATGGCAGAGAAAGATCCAGTTCAAGTCATTCGCCAAGCACTCTCCCAGACACTTGTCTTCTATTACCCATTTGCGGGTAGGCTCAGGGAGGGGTCTCACCGCAAATTAATGGTGGATTGCACTGGAGAAGGTGTCATATTCATTGAGGCAGATGCAGACGTCACACTTGATCAGTTTGGCGATTCTCTTTACCCTCCATTCCCATGCTTCCATGAACTGCTATACGATGTCCCTGGCACACAACAAATTACCAACACTCCCCTTCTACTTGTACAGGTGACACGACTCAAGTGTGGTGGTTTGATCTTAGCCATTGGCCTCAACCACACCATGTGTGATGGACCCGGTTACAAACAATTCTTGAACGCTTGGGCGGAAATGGCTAGAGGTGCAACCATACCTTCCATCGCACCAGTGTGGCGTAGGGAGCTCCTAATGGCAAGAGACCCACCTCGCATTACATGCAACCATCGCGAATTCGAGCAAGTCCAAGATACTCTTCCTTCTTCCAACCAAAACATGGTTCAACGATCATTCTTCTTTGGACCACTCGATATAGCTGCACTTCGGCGCTTGATTCCCCAACACCTTCAGCACTGCACCACATTTGACCTCATCACAGCATGCCTCTGGCGCTGTCGCACAAAAGCACTGCAGATAGAGGCAGACGAGGATGTTCGCATGATGTGCATAGTCAACGGACGTGGTCGGTTCAATCCTCCACTTCCTGTTGGTTACTACGGCAACTGTTTTGCATATCCGGCGGCAGTGACGACTGCGGGGAAGCTATGCAGAAACCCATTTGGTTATGCGGTGGAATTGATAAATAAAGTGAAAGGCGAGATGACAGAAGAGTACCTGCAATCTGTTACAGACCTTCTGGTGATGAAAGGACGATGCTTATTCACAACTGTGAGGTCTTGTATTGTGTCATATATGGCACGTTTGAACCTTAGAGAAGTGGATTTTGGTTGGGGTGAGGCTGTGTATGGTGGAATGGCCCAAGCTGGGGCTGGGGGCTTCTTAGGAACTTCGTATTTCTGTTCTGCTAAGAATGGAAAAGGAGAAGAAGGCATAATATTTCCGATTTGCTTACCTGCTGAAGCTATGGAGAGGTTTGCTGAAGAGTTTAACGACATGCTAGGCAACAAAAACCAACCACAAACCAATTCTGCTACTTTTATAATGTCTACCCTGTAA 1386 0.4776 MILMASSSSSSSLKFTVRRCQPQLVPPAIPTPREVKPLSDIDDQEALRLHVAMVQIYPKHASMAEKDPVQVIRQALSQTLVFYYPFAGRLREGSHRKLMVDCTGEGVIFIEADADVTLDQFGDSLYPPFPCFHELLYDVPGTQQITNTPLLLVQVTRLKCGGLILAIGLNHTMCDGPGYKQFLNAWAEMARGATIPSIAPVWRRELLMARDPPRITCNHREFEQVQDTLPSSNQNMVQRSFFFGPLDIAALRRLIPQHLQHCTTFDLITACLWRCRTKALQIEADEDVRMMCIVNGRGRFNPPLPVGYYGNCFAYPAAVTTAGKLCRNPFGYAVELINKVKGEMTEEYLQSVTDLLVMKGRCLFTTVRSCIVSYMARLNLREVDFGWGEAVYGGMAQAGAGGFLGTSYFCSAKNGKGEEGIIFPICLPAEAMERFAEEFNDMLGNKNQPQTNSATFIMSTL* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0633 461 PANTHER ALCOHOL ACYLTRANSFERASE 15 445 - -
Vra10g0633 461 Gene3D - 220 440 IPR023213 -
Vra10g0633 461 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 15 445 - -
Vra10g0633 461 Gene3D - 11 219 IPR023213 -
Vra10g0633 461 Pfam Transferase family 20 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0633 Vra-Chr10 12210449 12212469 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0633 13 439 Monolignol Biosynthesis Gene Families AT5G48930 30.474 2.12e-56 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0633 K19861 - gmx:100792864 692.575