Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0629 ATGGCCTCATCATCATCATCTTCTTCTCTCAAGTTTACAGTGCGAAGGTGCCAACCTCAGCTGGTGCCTCCTGCTATCCCCACTCCTCGTGAAGTTAAGCCACTTTCCGACATTGATGATCAAGAAGCCCTTCGTACCCACCTTCCCGTGATACAAATTTATCGAAAGCAAGCATCAATGGCAGAGAAAGACCCAGTTCAAGTCATTCGCCAAGCACTCTCCCAGACACTTGTCTTCTATTACCCATTTGCGGGTAGGCTTAGAGAGGGGCCTCACCGCAAGTTGATGGTGGATTGCACTGGAGAAGGTGTCATGTTCATCGAGGCCGATGCAGACGTCACGCTTGATCAGTTTGGCGATTCTCTCCAGCCTCCATTCCCATGCTTCCATGAACTTCTATACGATGTCCCTGGCACACAAGAAATTACCAACGCTCCCCTTCTACTTGTACAGGTGACACGGCTCAAGTGTGGTGGTTTCATCTTAGCCATCCGCCTCAACCACACCATGTGTGATGGACCCGGTTTCAAACAATTCATGAGCGCGTGGGCGGAAATGGCTAGAGGTGCAACCAAACCTTCCATCGCACCAGTGTGGCGTAGGGAGCTCCTAATGGCAAGAGACCCACCTCGCATTACATGCAACCATCGCGAATTCGAGCAAGTCCAAGATACCCTTCCTTCTTCAGACCAAAACTTGGTTCAACGATCATTCTTCTTTGGACCACTCGATATAGCTGCACTTCGGCGCTTGATTCCCCAACACCTTCAGCACTGCACCACATTTGACCTCATCACAGCATGCCTCTGGCGCTGTCGCACAAAAGCACTGCAGATAGAGGCAGACGAGGATGTTCGCATGATGTGCATAGTCAACGGACGTGGTCGATTCAACCCTCCACTTCCTGTTGGTTACTACGGCAACGCTTTTGCATATCCGGCGGCAGTAACGACTGCAGGGAAGCTATGCAGAAACCCATTTGGGTATGCGGTGGAATTGATAAATAAAGTGAAAGGTGAGATGACAGAAGAGTACCTGCAATCTGTTGCAGACCTGATGGTGATGAAGGGACGATGCTTATTCACAACTGCGAGGTCTTATATGGTGTCACATTTGGCACGTTTGAACCTTAAAGAAGTGGATTTTGGATGGGGTGACGCTGTGTATGGTGGAGGAGCCAAAGCTGGGGCTGGGAGGTTCTTAGGAGTTTCGTATTTCTGTTCTGCTAAGAATGGAAAAGGAGAAGAAGGCATAATATTTCCGATTTGCTTACCTGCTGAAGCTATGGAGAGATTTGCTCAAGAGTTTAACCTCATGCTAGGCAACAAAAGCCAACCTCAAACCAGTTCTGCTACTTTTATAATGTCTACCCTCTAA 1377 0.488 MASSSSSSSLKFTVRRCQPQLVPPAIPTPREVKPLSDIDDQEALRTHLPVIQIYRKQASMAEKDPVQVIRQALSQTLVFYYPFAGRLREGPHRKLMVDCTGEGVMFIEADADVTLDQFGDSLQPPFPCFHELLYDVPGTQEITNAPLLLVQVTRLKCGGFILAIRLNHTMCDGPGFKQFMSAWAEMARGATKPSIAPVWRRELLMARDPPRITCNHREFEQVQDTLPSSDQNLVQRSFFFGPLDIAALRRLIPQHLQHCTTFDLITACLWRCRTKALQIEADEDVRMMCIVNGRGRFNPPLPVGYYGNAFAYPAAVTTAGKLCRNPFGYAVELINKVKGEMTEEYLQSVADLMVMKGRCLFTTARSYMVSHLARLNLKEVDFGWGDAVYGGGAKAGAGRFLGVSYFCSAKNGKGEEGIIFPICLPAEAMERFAQEFNLMLGNKSQPQTSSATFIMSTL* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0629 458 Gene3D - 8 216 IPR023213 -
Vra10g0629 458 Pfam Transferase family 17 438 - -
Vra10g0629 458 Gene3D - 217 437 IPR023213 -
Vra10g0629 458 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 12 442 - -
Vra10g0629 458 PANTHER ALCOHOL ACYLTRANSFERASE 12 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0629 Vra-Chr10 12178368 12183795 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0629 10 434 Monolignol Biosynthesis Gene Families AT5G48930 30.000 1.74e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0629 K19861 - gmx:100792864 706.442