Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0627 ATGGCCTCATCATCATCTTCTTCTTCTTCTCTCAAGTTTACAGTGAGAAGATGCCAACCGCAACTGGTGCCTCCTGCTATCCTTACTCCTCATGAAGTTAAGCCACTTTCCGACATTGATGATCAAGATGGTTTGCGTGTCCACCTTCCCATGATACACATTTATAAAAAGCAAGCATCAATGGCAGAGAAAGACCCAGTTCAAGTCATTCGCCAAGCACTTTCGCAGACACTTGTCTTCTATTACCCATTTGCGGGTAGGCTTAGAGAGGGGCCTAACCGCAAATTGATGGTGGATTGCACCGGAGAAGGTGTCATGTTCATCGAGGCCGATGCAGACGTCACATTTGATCAGCTTGGCGATTCTCTCCAGCCTCCATTCCCATGCTTCCATGAACTTCTATACGATGTCCCTGCCACACAGCAAATTACCAACACTCCCCTTCTACTTGTACAGGTGACACGACTCAAGTGTGGTGGTTTCATCTTCGCCATCGCCTTCAACCACACCATGTGCGATGGACCCGGTTACGAACAATTCATGAGCGCGTGGGCGGAAATGGCTAGAGGTGCAACCAAACCTTCCATCGCACCAGTGTGGCGTAGGGAGCTCCTAATGGCAAGAGACCCACCTCGCATTACATGCAAGCATCGCGAATTCGAGCAAATCCAAGATATGCTTCCTTCTTCCAACCAAAACATGGTTCAACGATCATTCTTCTTTGGACCACTCGATATAGCTGCACTTAGGCGCTTGATTCCCCAACACCAGCACTGCACCACATTTGATCTCATCACGGCATGCCTCTGGCGCTGTCGCACAAAAGCACTGCAGATAGAGGCAGACGAGGATGTTCGCATGATGTGCATAGTCAACGCACGTGGTCGGTTCAACCCTCCACTTCCTGTTGGTTACTACGGCAACGCTTTTGCATATCCGGCGGCAGTAACTACTGCAGGGAAGCTATGCAGAAACCCATTCGGTTATGCGGTGGAATTGATAAATAAAGTGAAAGGTGAGATGACAGAAGAGTACCTGCAATCTGTTGCAGACCTGATGGTGATTAAGGGACGATGCTTATTCACAACCGTGAGGTCTTATATTGTGTCACATTTGGCACGTTTTAACCTTAGACAAGTGGATTTTGGTTGGGGTGACGCTGTGTACGGTGGAGTGGCCCAAGCTGGGGTTGGGAGCTTCTTAGGAGTTTCGTATTTCTGTTCTGCTAAGAATGGAAAAGGAGAAGAAGGCATAATATTTCCGATTTGCTTACCTGCTGAAGCTATGGAGAGGTTTGCGGAAGAGTTTAACCACATGCTAGGCAACAAAAGCCAACCTCAATGTCTACCCTGTAATAATAAGTATTTCATGAAATAA 1377 0.4764 MASSSSSSSSLKFTVRRCQPQLVPPAILTPHEVKPLSDIDDQDGLRVHLPMIHIYKKQASMAEKDPVQVIRQALSQTLVFYYPFAGRLREGPNRKLMVDCTGEGVMFIEADADVTFDQLGDSLQPPFPCFHELLYDVPATQQITNTPLLLVQVTRLKCGGFIFAIAFNHTMCDGPGYEQFMSAWAEMARGATKPSIAPVWRRELLMARDPPRITCKHREFEQIQDMLPSSNQNMVQRSFFFGPLDIAALRRLIPQHQHCTTFDLITACLWRCRTKALQIEADEDVRMMCIVNARGRFNPPLPVGYYGNAFAYPAAVTTAGKLCRNPFGYAVELINKVKGEMTEEYLQSVADLMVIKGRCLFTTVRSYIVSHLARFNLRQVDFGWGDAVYGGVAQAGVGSFLGVSYFCSAKNGKGEEGIIFPICLPAEAMERFAEEFNHMLGNKSQPQCLPCNNKYFMK* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0627 458 Gene3D - 218 437 IPR023213 -
Vra10g0627 458 Gene3D - 9 217 IPR023213 -
Vra10g0627 458 Pfam Transferase family 19 439 - -
Vra10g0627 458 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 13 442 - -
Vra10g0627 458 SUPERFAMILY CoA-dependent acyltransferases 249 440 - -
Vra10g0627 458 PANTHER ALCOHOL ACYLTRANSFERASE 13 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0627 Vra-Chr10 12162684 12164756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0627 46 436 Monolignol Biosynthesis Gene Families AT5G48930 28.993 2.92e-50 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0627 K19861 - gmx:100792864 675.626