Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0626 ATGGCCTCATCATCATCTTCTTCTTCTCTCAAGTTTACAGTGCGAAGGTGCAAACCCCAGCTGGTTCCTCCTGCTATCCCCACTCCTCGTGAATTTAAGCCACTTTCCGACATTGATGATCAAGAAGCCCTTCGTATACACGTTCCAATGATACAAATTTATCGAAAGCAAGCATCAATGGCAGAGAAAGACCCAGTTCAAGTGATTCGCCAAGCACTCTCCCAGACACTTGTCTTCTATTACCCATTTGCGGGTAGGCTTAGAGAGGGGCCTAACCGCAAATTGATGGTGGATTGCACCGGAGAAGGTGTCATGTTCATTGAGGCTGATGCAGACGTCACGCTTGATCAGTTCGGCGATTCTCTTTACCCTCCATTCCCATGCTTCCATGAACTTCTATACGATGTCCCTGCCACACAACAAATTACTAACACTCCCCTTCTACTTGTACAGGTGACACGACTCAAGTGTGGTGGTTTCATCTTAGCCATCGGTTTCCACCACACCATGTGTGATGGACACGGTTATGAACAATTCATGAGCACGTGGGCGGAAATGGCTAGAGGTGCAACCAAACCTTCCGTTGCACCAGTGTGGCGTAGGGAGCTCCTAATGGCAAGAGACCCACCTCGCATTACATGCAAGCATCGCGAATTCGAGCAAGTCAAAGATACCCTTCCTTCTTCCAACCAAAACATGGTTCAACGATCATTCTTCATTGGACCACTCGATATAGCTGCACTTCGGCGCTTGATTCCCCAACACCTTCAGCACTGCACCACGTTTGATCTCATCACAGCATGCCTCTGGCGCTGTCGCACAAAAGCACTGCAGATAGAGGCAGACGAGGATGTCCGAATGATGTGCGTAGTCAACGCACGTGGTCGGTTCAATCCTCCACTTCCTGTTGGTTACTACGGCAACGCTTTTGCATATCCGGCGACAGTAACGACAGCAGGGAAGCTTTGCAGAAACCCATTTGGGTATGCGGTGGAGTTGATAAATAAAGTGAAAGGTGAGATGACAGAAGAGTACCTGCAATCTGTTGCAGATCTGATGGTGATGAAGGGACGATGCTTATTCACAACTGTGAGGTCTTATATTGTGTCACATTTGGCACGTTTTAACTTTAGAGAAGTGGATTTTGGTTGGGGTGAGGCTGTGTATGGTGGAGTGGCCCATGCTGGGGCTGGGAGCTTCTTAGGAGTTTCGTATTTCTGTTCTGTTAAGAATGGAAAAGGAGAAGAAGGAATAATATTTCCGATTTGGTTACCTGCTGAAGCTATGGAAAGGTTTGCTGAAGACTTTAACCACATGCTAGGCAACAAAAACCAACCTCAAAACAGTTCTGCTACTTTTATAAAGTCTACCCTGTAA 1377 0.4713 MASSSSSSSLKFTVRRCKPQLVPPAIPTPREFKPLSDIDDQEALRIHVPMIQIYRKQASMAEKDPVQVIRQALSQTLVFYYPFAGRLREGPNRKLMVDCTGEGVMFIEADADVTLDQFGDSLYPPFPCFHELLYDVPATQQITNTPLLLVQVTRLKCGGFILAIGFHHTMCDGHGYEQFMSTWAEMARGATKPSVAPVWRRELLMARDPPRITCKHREFEQVKDTLPSSNQNMVQRSFFIGPLDIAALRRLIPQHLQHCTTFDLITACLWRCRTKALQIEADEDVRMMCVVNARGRFNPPLPVGYYGNAFAYPATVTTAGKLCRNPFGYAVELINKVKGEMTEEYLQSVADLMVMKGRCLFTTVRSYIVSHLARFNFREVDFGWGEAVYGGVAHAGAGSFLGVSYFCSVKNGKGEEGIIFPIWLPAEAMERFAEDFNHMLGNKNQPQNSSATFIKSTL* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0626 458 PANTHER ALCOHOL ACYLTRANSFERASE 12 442 - -
Vra10g0626 458 Pfam Transferase family 16 439 - -
Vra10g0626 458 Gene3D - 8 216 IPR023213 -
Vra10g0626 458 Gene3D - 217 436 IPR023213 -
Vra10g0626 458 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 12 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0626 Vra-Chr10 12157655 12159701 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0626 10 434 Monolignol Biosynthesis Gene Families AT5G48930 29.545 1.85e-55 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0626 K19861 - gmx:100792864 695.656