Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0617 ATGGGGTGTGTGATTAGCAGGGAGGTGTCGAAGGGGATAATCTCTGAGGTGAAGGAGGAGAAGGGTTTGAGTGGTCAGAGTAAGAGGAAGGTTGATGGAGTGTCGGGGAGCAAGAGTGAGGTTGTGGTAGAGGTTCAGAATGGCGAGGAGAAGGAGAAGGAGAAGGGTGGTGGTGAAGGGGTGCAACGGCCTCGGGGCGAAAGGAGGAGATCGAAGACGAATCCGAGGCCGAGCAATCTGCCCAAACATTTGCGGGGGGAGCAGGTTGCTGCCGGATGGCCGCCGTGGCTCACTGCAGTGTGTGGGGAAGCACTCAGTGGCTGGATTCCGCGAAAGGCAGACACCTTTGAGAAAATTGATAAGATTGGACAAGGAACTTATAGTAATGTGTACAAAGCTAAAGACACAATGACGGGTAAAATTGTTGCCCTAAAGAAGGTTCGTTTTGACAATTTAGAACCTGAGAGTGTAAAATTCATGGCGAGAGAGATTCTCATTTTGCGAAGGTTGGACCATCCCAATGTTGTAAAGTTGCAAGGTTTAGTTACGTCAAGGATGTCCTGTAGTTTGTATTTGGTGTTCGATTACATGGATCATGATTTGGCTGGACTTGCTGCAAGCCCAGGAATCAGATTCACAGAGCCTCAGGTAAAGTGTTACATGCATCAGCTGCTATCAGGACTTGAGCACTGTCATAGCCGTCATGTACTTCACCGTGATATTAAAGGGTCAAATCTTCTTATTGACAATGAAGGAACACTTAAGATCGCCGACTTTGGATTGGCTTCTATTTTTGATCCAAACCATAAGCATCCAATGACTAGTCGTGTAGTAACCCTTTGGTATCGACCTCCTGAGCTGCTCCTTGGTGCCACAGATTATAGTGTGGGTGTAGACCTCTGGAGTGCTGGATGTATTTTAGGAGAATTATTGGCTGGGAAACCAATCATGCCTGGTCGTACAGAGGTGGAACAACTGCACAAGATATACAAACTATGTGGTTCACCTTCGGATGAGTATTGGAAGAAGTCAAAGTTGCCTAATGCTACCTTGTTTAAACCGCGAGAGCCATACAAGAGGCGCATAAGAGATACTTTTAAAGATTTTCCACCTTCTGCTCTACCCCTCATTGATACACTTCTCGCAATTGATCCTGTAGAACGGGAAACTGCCTCGGATGCTTTGAGAAGTGAGTTCTTTAGCACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAATATCCCCCAAGCAAGGAAATGGATGCTAAACGAAGGGATGATGAAATGAGGAGGCAAAGAGCTGCGGGCAAAGCTCAGGCTGATGGCCCCAAGAAGCATCGTACTCGTGATCGTGGTACAAAAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCGAATATTGATAGAAGAAGGCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATCAAGATGGACAGCTTGGTTTTCCTTTGGGTTCTTCCCATCATATTGATCCGGATACTGTTCCAACTGATGTCTCTTTCACATCAACCTCTTATACCTATTCAAAGGAACCATTCCAAGCTTGGTCTGGTCCCATTGGCAATGCTGCTGACATTGGAGTACCAAAGCGGAAGAAACACACTGCAGGTGATGCATTGGATTTATCAAAACCACAGAAAGATTCTCTCAAGGACAAGATTAAAGGAAAGAAAATCATAGCTTAG 1737 0.4588 MGCVISREVSKGIISEVKEEKGLSGQSKRKVDGVSGSKSEVVVEVQNGEEKEKEKGGGEGVQRPRGERRRSKTNPRPSNLPKHLRGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDTMTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMDHDLAGLAASPGIRFTEPQVKCYMHQLLSGLEHCHSRHVLHRDIKGSNLLIDNEGTLKIADFGLASIFDPNHKHPMTSRVVTLWYRPPELLLGATDYSVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKSKLPNATLFKPREPYKRRIRDTFKDFPPSALPLIDTLLAIDPVERETASDALRSEFFSTEPYACDPSSLPKYPPSKEMDAKRRDDEMRRQRAAGKAQADGPKKHRTRDRGTKAFPAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGQLGFPLGSSHHIDPDTVPTDVSFTSTSYTYSKEPFQAWSGPIGNAADIGVPKRKKHTAGDALDLSKPQKDSLKDKIKGKKIIA* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0617 578 SUPERFAMILY Protein kinase-like (PK-like) 111 406 IPR011009 -
Vra10g0617 578 MobiDBLite consensus disorder prediction 15 85 - -
Vra10g0617 578 MobiDBLite consensus disorder prediction 406 468 - -
Vra10g0617 578 MobiDBLite consensus disorder prediction 544 578 - -
Vra10g0617 578 MobiDBLite consensus disorder prediction 44 74 - -
Vra10g0617 578 SMART serkin_6 116 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0617 578 Gene3D Transferase(Phosphotransferase) domain 1 199 440 - -
Vra10g0617 578 Pfam Protein kinase domain 116 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0617 578 Gene3D Phosphorylase Kinase; domain 1 103 198 - -
Vra10g0617 578 MobiDBLite consensus disorder prediction 529 578 - -
Vra10g0617 578 PANTHER CELL DIVISION PROTEIN KINASE 44 555 - -
Vra10g0617 578 CDD STKc_CDK9_like 116 400 - -
Vra10g0617 578 MobiDBLite consensus disorder prediction 418 455 - -
Vra10g0617 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Vra10g0617 578 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524
Vra10g0617 578 PANTHER OS01G0367700 PROTEIN 44 555 - -
Vra10g0617 578 ProSiteProfiles Protein kinase domain profile. 116 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0617 Vra-Chr10 12062423 12066828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0617 108 440 Core Cell Cycle Gene Families AT5G10270 52.722 2.01e-124 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vra10g0617 Pkinase 1.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0617 K08819 - gmx:100786837 1063.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0617 10 12062423 12066828 Vra8g1553 8 32537219 32545830 ECH
Vra10g0617 10 12062423 12066828 Vra10g0617 10 12062423 12066828 ECH
Vra10g0617 10 12062423 12066828 Vra8g1553 8 32537219 32545830 PCT