Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0613 ATGGGTACTGAATTAAGTTACGCACTTTCAAAATTGCATATGCTATCCACTTCAGATTATGCCTCCGTCGTGTCCATGAACATTTTTGTGGCTCTGCTGTGTACTTGCATTGTCATTGGCCATCTTCTTGAGGAGAATCGCTGGGTGAATGAATCTATCACTGCCCTTTTTATAGGTGTTTGCACTGGTGTAGTCATTCTGTTGCAAAGTCGCGGCAAAAGCTCGCATCTTCTAGTTTTCAGTGAAGATCTTTTCTTTATATACCTTCTGCCTCCTATCATATTTAATGCAGGGTTTCAAGTGAAAAAGAAACGGTTCTTTGTTAACTTCATGACCATTATGCTTTTTGGAGCTGTTGGTACATTAATAAATTGTAGCATCATAACTTTCGGTGTCATACAAATTTTTAAGAGAATGGGTGTCGGAAAATCACTGGAGATGGGAGATTATCTAGCAATTGGGGCAATATTTGCTGCAACAGATTCAGTGTGCACATTGCAGGTGCTAAACCAGGATGAGACACCTTTACTATATAGTCTTGTGTTTGGCGAGGGTGTTGTTAACGATGCTACATCTGTTGTGCTTTTCAATGCAATCAAAAGTTTTGATCTCGACATAATTGACCACAGAATTGGTTTGCATTTTTTCGGCAATTTCTTCTACCTGTTTATCGCAAGCACCATGCTTGGGGTTTTGGCTGGTCTACTCAGCGCTTACATTATTAAAACGCTTTATATTGGCAGGCACTCTACAGATCGCGAGGTTGCTCTTATGATGTTAATGGCATACCTTTCCTATATTCTAGCTGAATTATGGTATCTGAGTGGCATTCTCACTGTATTCTTCTGTGGGATTGTTATGTCACATTATACTTGGCATAATGTGACTGAGAGCTCGAGAATCACTACCAAACATGCTTTTGCAACTCTCTCTTTTGTTCTTGAAACCTTTATCTTCCTTTATGTTGGTATGGATGCGTTGGACATTGAAAAGTGGAGGTTTGTTAGCGATAGGCCGAAAACATCTGTTGCTGTTAGTTCAGTTTTATTGGGTCTCGTACTTGCCGGAAGAGCAGCATTTGTTTTTCCCCTATCCTTCTTATCAAACCTCACTAAAAAGTCTCAAAGTGAAAAAATAAGCTTCAGGGAGCAGGTGATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATGGCACTTGCCTATAATCAGTTCACCTTGTCAGGTCACACTGAACTGCGAACCAATGCCATCATGATCACCAGTACCATCACTGTCGTGCTTGTCAGCACAGTGGTGTTTGGTTTGATGACCAAGCCACTCATAAGGTTTTTGCTGCCAGTTAGTCCACCTCCTAAACGCAAGAACAGCTTGGGAAATATGGAATCATCTAATAATCCTCCAAAATCAATCACTGTGCCCTTTCTTGGAGGCTCTCATGATTCTGAAAACGAACTTGATGGCAATGAAGATCATCGTCCAAACACTATTCGTGCCTTACTAAGCTCTTCAACTCATAATGTTCATCACTTATGGCGTACGTTTGATAATTCAATCATGCGTCCAGTTTTCGGCGGTAGGGGATTTGTTCCTGTCGATACTACCTCACCAACCGGCAGTCAACAGTGGCATTAA 1638 0.4127 MGTELSYALSKLHMLSTSDYASVVSMNIFVALLCTCIVIGHLLEENRWVNESITALFIGVCTGVVILLQSRGKSSHLLVFSEDLFFIYLLPPIIFNAGFQVKKKRFFVNFMTIMLFGAVGTLINCSIITFGVIQIFKRMGVGKSLEMGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIKSFDLDIIDHRIGLHFFGNFFYLFIASTMLGVLAGLLSAYIIKTLYIGRHSTDREVALMMLMAYLSYILAELWYLSGILTVFFCGIVMSHYTWHNVTESSRITTKHAFATLSFVLETFIFLYVGMDALDIEKWRFVSDRPKTSVAVSSVLLGLVLAGRAAFVFPLSFLSNLTKKSQSEKISFREQVIIWWAGLMRGAVSMALAYNQFTLSGHTELRTNAIMITSTITVVLVSTVVFGLMTKPLIRFLLPVSPPPKRKNSLGNMESSNNPPKSITVPFLGGSHDSENELDGNEDHRPNTIRALLSSSTHNVHHLWRTFDNSIMRPVFGGRGFVPVDTTSPTGSQQWH* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0613 545 MobiDBLite consensus disorder prediction 456 494 - -
Vra10g0613 545 Pfam Sodium/hydrogen exchanger family 28 443 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Vra10g0613 545 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 28 446 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vra10g0613 545 Gene3D - 146 198 - -
Vra10g0613 545 PANTHER SODIUM/HYDROGEN EXCHANGER 7 541 IPR018422 GO:0006812|GO:0015299|GO:0016021
Vra10g0613 545 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vra10g0613 545 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vra10g0613 545 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vra10g0613 545 PRINTS Na+/H+ exchanger signature 154 164 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Vra10g0613 545 MobiDBLite consensus disorder prediction 457 473 - -
Vra10g0613 545 PANTHER SODIUM/HYDROGEN EXCHANGER 2 7 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0613 Vra-Chr10 12008488 12013442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0613 10 539 Antiporters AT3G05030 74.436 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0613 - - gmx:100789667 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0613 10 12008488 12013442 Vra8g1552 8 32500559 32507100 PCT