Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0606 ATGGAGTGCAACAAAGATGAAGCTGTGAGGGCTAAGCAGATTGCTGAAAATAAGATGCAAGCTGGTGACTATGAAGGGGGGCTGAAATTTGCTACAAAAGCCCAAAGGCTGTTTCCTGATATTCAAAACATTGTTCAGATCCTTGCAGTTTGTGAGGTCCACTGTGCTGCTCAGAAGAAACCCTCTGGGTCTGACATGGACTGGTATGGAATTCTCCAGACTCAACAATCTGCTGATGAAGCAACCATTAAGAAACAGTATAGAAAGCTTGCATTGCTACTTCATCCTGATAAAAATAAATCTGCTGGTGCAGAGGCTGCTTTCAAGTTGGTTGGTGAAGCTAACAGAGTGTTAACCGATCAATCAAAGCGTACTCTGTATGATTCAAAATTTGGAGTTTCAGCGGGAAATACAGCAGCTAAGGTCGCCCCTTGTCACCCAAATGGAAATGCAAGGAATTATCAGAACATTTTTAATTCACAGTCTCATGCTTGGAATCCATATCATCAGTTTGAAAGTTCGACATTCTGGACATGTTGTTGTCATTGTAATACTAGATATCAATACTACAAAACTATTTTAAATCAGACCATACGCTGTCAACAGTGTTCTAAACCCTTTACAGCTCATGATATGGGGAACCCCAATGTGGCACAAACATATTGGTCACCTTTCAATAATCACGAAGGGTCTGCAAAACATGCATCGTCTAAAGAAGCATCAAAAGGCAATGGTGGAAAATCTCGTGGTAGAGAAGAAGAGGGTGTGCCCATGTCAAAATCCACTGCGGGAGTTGGTGCCAATTCTAAAGTTGCAAATGGCAGAAATGGCCATGTGGCTGCAGGAGTGACAAAGGCTGATGTTAAAGCGTCGAAAACCAAGGAATCGCGAGCCTCAATGAAGGTTGGTTGTAAAAGAGCAAGGCAGTCAGGATCATATAATAATAACAAAGCTGGAGATGGTAAAGGCATGAAAGACTCCAAGGATCAAGAAAATACGGTTGATCCTTCTAGGAAAACTTCAAGGAAAAAACAGCATGTTCTGTACCCAGAAACTGATAAAGCTGGTGATTTTGGAAGCTCATCCAAAAGTACACAACATCATGAATCATCTACCATCCCTAGAGTAGAGGAAAAAGAAGTGTCAGCAACGGGTGATGGTGATCAGAATGGGGAGACAAGAAATAAAGCAGGTGCACTACATGAAGAAACAATTATAAGGAATAGAGCCAAAGTTGAGCAGACTAATGTGCAAGGAAAGGAGGTATTGAACTCAGATCTCAATGATAGAAAGTCTAAAGCTGTCTATTGTTCTCCATCGAAGTCAAATTTATCTCCCAATTCAGAGATTGTCTGTCCTGATGCAGATTTCAGTGATTTTGAGAGAGATAAGGCAGAGGATTGTTTTGCTGTTAATCAATTATGGGCTATTTTTGACAATATTGATGGTATGCCACGATTCTATGCTCTTGTGAAGAAAGTCTACTCCCCTTTCACGTTGCGGATTACTTGGCTAGAAGCTGACTCAGATGACCAAGGTGAGATTGACTGGCATAAAGCCGGTTTGCCTATTGCTTGTGGTAAGTTCAGACTTGGTCATTCTCAGAGTACTACAGATCGTTTTATGTTCTCTCATCAGATGCATTGCATAAAAGGAAGTAGGACTACTTATCTGATATACCCAAAGAAGGGAGAAATTTGGGCAATTTTCAGACATTGGGATCTTGGATGGAGTTCAAATCCAGAAAAGCATTTTGAGTACGAATTTGAATATGTGGAAGTTCTATCAGATTTTGATGAAAATTTAGGCATTGAAGTTGCTTATCTTGGCAAAGTGGCAGGGTTTGTTAGTCTCTTTCAACATACTGTATTAGATGGTATTAGCTTATTTTGTGTATCACCTCGTGAGATGTACAGGTTCTCTCATCGGATTCCTTCTTACAAGATGACAGGTGCTGAAAGGAAAGGTGTTCCAAGTGGATCTTTTGAACTTGATCCTGCTGGTCTGCCTACTTGTCTTTTTGAAGTTGGTGATACTGGTGTTGCGAAAACGGATGGAGTCAATTGTTCCCACCAGGAATATGCAAACTCTAAAGTTGAACAGGCAACTTCTAATGATAGTATTCACAAATCAAAGTTGCAAGAGACTATTGATGCCGACAGAACAGCACAAATTCTCAGAAGGTCTCCAAGATCGAGCCAAAAAAATATGGACAATGGCCAAGCAAGCACTGTTCAATTCACGGTCAGAAAGGATGACATAAACATTGACCACAGGGACTACAGTCCCCCAGAAGGAAGCGCTGCTTCGACCCATACTAATGAGAGGAAGGTCAAGAAACCTCAGAAACACGAGAAAAATAGTTATGATGGAGAGACATTGAATAAGTTGCATAAAGATCTAAGCAAGAAAAATGTTCTAGGAGATGCAACTGAAAGGACATGTAAGTTGACTGTTAATCATTCAAAAAACAGCAATAATCTGAAGAGTAGCAACACTCCTCAGTTTGGAGAATCATGTTACGACTTTAAGAAGGAAAAATCTGAAAAGACTTTTCAGTGTGGTCAGATATGGGCAATATATTGTGATGGGGATTATATGCCCAATACTTACGCTCAAATTAAGAAGATTGAATTCACTCCTAATTTTAGATTGCAGGTTTCCATGCTTGAACCGTGCTCACCGTCAGGTGATCTTAAAAGAACAATATCTTGTGGCACCTTCGAAGTTAAAAAAGGCAAATTACAGATTCTCTCTCTCTCTGCATTCTCTCATCAGTTAAAAGTTGAACCCTCGGTAAATAATAGATATGAAATTTACCCTAGAAAAGGTGAGGTTTGGGCTCTGTACGGGGACCAGAACTATGAGCTGGCTTCTTCAAAGCAGGGCAAAGGTAAATGTGATATAGTAGAAGTATTAGCAGATAGTGAGAAGAGTATACAGGTTGTTGTTCTGACGCCACATAGCAACTCCAAGACAATTTTCAGAGCTCCTAGAATTCAGAGATCTAAAACTGGTGTAATTGAAATATTAAGAGAAGAGGTTGGCAGATTTTCACATCAGATTCCTGCTTTTCAGCACAGGGACAATGTGCATCTCAGAGGGTGTTGGGAGCTTGATCCTTCTTCAGTTCCTGGTTCTTTCGTACCAATAAACTGA 3159 0.4039 MECNKDEAVRAKQIAENKMQAGDYEGGLKFATKAQRLFPDIQNIVQILAVCEVHCAAQKKPSGSDMDWYGILQTQQSADEATIKKQYRKLALLLHPDKNKSAGAEAAFKLVGEANRVLTDQSKRTLYDSKFGVSAGNTAAKVAPCHPNGNARNYQNIFNSQSHAWNPYHQFESSTFWTCCCHCNTRYQYYKTILNQTIRCQQCSKPFTAHDMGNPNVAQTYWSPFNNHEGSAKHASSKEASKGNGGKSRGREEEGVPMSKSTAGVGANSKVANGRNGHVAAGVTKADVKASKTKESRASMKVGCKRARQSGSYNNNKAGDGKGMKDSKDQENTVDPSRKTSRKKQHVLYPETDKAGDFGSSSKSTQHHESSTIPRVEEKEVSATGDGDQNGETRNKAGALHEETIIRNRAKVEQTNVQGKEVLNSDLNDRKSKAVYCSPSKSNLSPNSEIVCPDADFSDFERDKAEDCFAVNQLWAIFDNIDGMPRFYALVKKVYSPFTLRITWLEADSDDQGEIDWHKAGLPIACGKFRLGHSQSTTDRFMFSHQMHCIKGSRTTYLIYPKKGEIWAIFRHWDLGWSSNPEKHFEYEFEYVEVLSDFDENLGIEVAYLGKVAGFVSLFQHTVLDGISLFCVSPREMYRFSHRIPSYKMTGAERKGVPSGSFELDPAGLPTCLFEVGDTGVAKTDGVNCSHQEYANSKVEQATSNDSIHKSKLQETIDADRTAQILRRSPRSSQKNMDNGQASTVQFTVRKDDINIDHRDYSPPEGSAASTHTNERKVKKPQKHEKNSYDGETLNKLHKDLSKKNVLGDATERTCKLTVNHSKNSNNLKSSNTPQFGESCYDFKKEKSEKTFQCGQIWAIYCDGDYMPNTYAQIKKIEFTPNFRLQVSMLEPCSPSGDLKRTISCGTFEVKKGKLQILSLSAFSHQLKVEPSVNNRYEIYPRKGEVWALYGDQNYELASSKQGKGKCDIVEVLADSEKSIQVVVLTPHSNSKTIFRAPRIQRSKTGVIEILREEVGRFSHQIPAFQHRDNVHLRGCWELDPSSVPGSFVPIN* 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0606 1052 MobiDBLite consensus disorder prediction 220 398 - -
Vra10g0606 1052 MobiDBLite consensus disorder prediction 220 243 - -
Vra10g0606 1052 MobiDBLite consensus disorder prediction 772 793 - -
Vra10g0606 1052 Pfam Domain of unknown function (DUF3444) 839 1027 IPR024593 -
Vra10g0606 1052 Pfam Domain of unknown function (DUF3444) 448 653 IPR024593 -
Vra10g0606 1052 PRINTS DnaJ domain signature 69 87 IPR001623 -
Vra10g0606 1052 PRINTS DnaJ domain signature 87 102 IPR001623 -
Vra10g0606 1052 PRINTS DnaJ domain signature 103 123 IPR001623 -
Vra10g0606 1052 MobiDBLite consensus disorder prediction 321 351 - -
Vra10g0606 1052 CDD DnaJ 67 120 IPR001623 -
Vra10g0606 1052 Pfam DnaJ domain 67 128 IPR001623 -
Vra10g0606 1052 Gene3D DnaJ domain 53 143 IPR036869 -
Vra10g0606 1052 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 717 1047 - -
Vra10g0606 1052 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 680 - -
Vra10g0606 1052 MobiDBLite consensus disorder prediction 727 750 - -
Vra10g0606 1052 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Vra10g0606 1052 MobiDBLite consensus disorder prediction 370 385 - -
Vra10g0606 1052 MobiDBLite consensus disorder prediction 288 302 - -
Vra10g0606 1052 SMART dnaj_3 66 123 IPR001623 -
Vra10g0606 1052 PANTHER - 1 680 - -
Vra10g0606 1052 PANTHER - 717 1047 - -
Vra10g0606 1052 SUPERFAMILY Chaperone J-domain 64 130 IPR036869 -
Vra10g0606 1052 MobiDBLite consensus disorder prediction 727 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0606 Vra-Chr10 11945307 11956965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0606 4 212 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.112 8.83e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0606 - - var:108342824 2005.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0606 10 11945307 11956965 Vra10g0606 10 11945307 11956965 ECH
Vra10g0606 10 11945307 11956965 Vra8g1547 8 32458802 32461743 PCT