Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0600 ATGGTTCCAATTGGTCATGCTTCTGATGACAAGCATAAAATACGAGACTCAGGAGAAATCGTTTTGGAGGAGCAGAAAAGTGTGGTAACTCTAAGAGAACTCTTGGACGAATGCATTAGTGACACTGAGAAATCTCATCAACCACCTGAATTAGCTGGTGGTAATCCAAGCTCAACGACTGAGCTTCACCGCAGGAAGTTACTCAGACCGTGCAGAATGAGATCAATTGAGCACCTACCATCTTTTCCTCCAAGTTGTTTGTCAAAAATAACAAAGCCTAAAAGCAAAAGCATTGGAAAAAACACTATTCGATGTAATCCACACAGTTCCAGAACTTTGGTGAATTTCAGTCTTTCTGACCTGAGAAATGCAACCAACAATTTTAGCAAAGAGAATATAATTGGAAGAGGTGGTTATGCTTATGTTTACAAGGGCAGACTGCAAAATGGGCAACTAATAGCAGTTAAGCAACTGAGTAGAGGGACTACAGAAGACAGGATATCAGTTCTTCTATCTGAGCTAGGAATTCTTTCTCATGTTGACCACCCCAATACTGCCATGCTTATTGGATTTGGAGTTGAAGGGGGAATGTACCTTGTGTTTCAATTATCTCCTCTGGGAAATTTAGGATCTCTTCTTCATGGTCCTAATAAAAATACCTTAGATTGGAGCAAAAGGTATAAAATCATTTTGGGGATAGCAGATGGCCTCTTCTATCTTCATGAGATTTGTCAAAGGCGAATCATTCATAGAGATCTTAAATCAGATAACATTCTGCTCACTGAGAATTTTGAGCCGCAGATTTGTGATTTTGGGCTCTCAAAATGGCTACCAGAATCCTGCACTCATCATATTGTACCAAAATTTGAAGGCACAGTTGGGTATTTTGCTCCTGAGTATGTGATGCATGGCATAGTAAACGAAAAAACTGATATTTATTCCTTTGGGGTCTTACTTTTGGAGATTATAACAGGGCGTCGTGCTTTGGATCATTTGAAAGAAAGTATTATGCTATGGGCAAAGCCTTTATTGGAAGCTAATAATATCAAGGACCTTGTTGATCCTTCTCTGGGTGATGATTATGACTGGGAACAAATGGAACGTGTAGTTTTGACTGCATCTCTGTGTGTTGAGCAGTTTCCTATCTTACGCCCCAGCATGAGTCAGATTGCAATACTGCTAAGAGGTGATGACTATGTCATGGAACATACTGAGAGGAGTAACAAGATGCACAAGAATACAACTCAAGGAGCTATCTAA 1260 0.3984 MVPIGHASDDKHKIRDSGEIVLEEQKSVVTLRELLDECISDTEKSHQPPELAGGNPSSTTELHRRKLLRPCRMRSIEHLPSFPPSCLSKITKPKSKSIGKNTIRCNPHSSRTLVNFSLSDLRNATNNFSKENIIGRGGYAYVYKGRLQNGQLIAVKQLSRGTTEDRISVLLSELGILSHVDHPNTAMLIGFGVEGGMYLVFQLSPLGNLGSLLHGPNKNTLDWSKRYKIILGIADGLFYLHEICQRRIIHRDLKSDNILLTENFEPQICDFGLSKWLPESCTHHIVPKFEGTVGYFAPEYVMHGIVNEKTDIYSFGVLLLEIITGRRALDHLKESIMLWAKPLLEANNIKDLVDPSLGDDYDWEQMERVVLTASLCVEQFPILRPSMSQIAILLRGDDYVMEHTERSNKMHKNTTQGAI* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0600 419 PANTHER RECEPTOR-LIKE CYTOSOLIC SERINE/THREONINE-KINASE 37 407 - -
Vra10g0600 419 SMART serkin_6 128 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0600 419 PANTHER OS08G0249100 PROTEIN 37 407 - -
Vra10g0600 419 MobiDBLite consensus disorder prediction 41 63 - -
Vra10g0600 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Vra10g0600 419 Gene3D Transferase(Phosphotransferase) domain 1 205 416 - -
Vra10g0600 419 Gene3D Phosphorylase Kinase; domain 1 100 202 - -
Vra10g0600 419 SUPERFAMILY Protein kinase-like (PK-like) 106 393 IPR011009 -
Vra10g0600 419 Pfam Protein tyrosine and serine/threonine kinase 131 337 IPR001245 GO:0004672|GO:0006468
Vra10g0600 419 ProSitePatterns Protein kinases ATP-binding region signature. 134 156 IPR017441 GO:0005524
Vra10g0600 419 ProSiteProfiles Protein kinase domain profile. 128 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0600 Vra-Chr10 11879547 11885197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0600 113 416 Receptor kinase-like Gene Family AT1G53420 40.836 8.57e-68 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vra10g0600 PK_Tyr_Ser-Thr 6.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0600 - - gmx:113001177 605.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0600 10 11879547 11885197 Vra8g1539 8 32326935 32331106 ECH
Vra8g1180 8 26931338 26935148 Vra10g0600 10 11879547 11885197 ECH
Vra10g1055 10 16290856 16294574 Vra10g0600 10 11879547 11885197 ECH
Vra10g0600 10 11879547 11885197 Vra10g0600 10 11879547 11885197 ECH
Vra10g0600 10 11879547 11885197 Vra8g1539 8 32326935 32331106 PCT