Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0581 ATGTGTTTATCTGAGGGAGAGAGAGGCATGGCTCTAGAAGCAGTAGTGTATCCCCAACCCCAGGATCCGTTTGGCTGTGCAATCAAAGACCTATACAGCTACAACAACATGTTAGAAGCTGCTGCAGCAAACTGGGGTTATGGAGATTTCACCCTTGAAAAAGAAGACCAAGCTTCTGTCACTTTTCTTGACAACCAAACAGAGAATTACTCCCATGGAGAATGGAACTCTTCTCCTCCCTCTTTGTTGCCTCACACCATGAATGCATCAAATCCTCCTTCTTCAGAAACCAGCAACACGCAGAACAACTTAGATACTTCAGTTTCCACCCCAGCTCGCCCCAAACGGCGCAGAACCAAAAGCAGGAAGAATAAGGAAGAGATTGAGAACCAGAGAATGACCCACATTGCTGTAGAACGCAACAGAAGGAAGCAGATGAACGAGTACCTCTCTGTTCTTCGCGCTCTAATGCCTGAATCTTACGTCCAAAGGGGTGATCAAGCATCTATTATTGGGGGTGCTATAAACTTTGTGAAGGAGCTTGAGCAGAGGCTGCAATTTCTTGGTGCTCAGAAAGAGAAAGAGGGGAAACCTGATGTACCATTTTCTGAGTTTTTCTCATTTCCTCAGTACTCAACAAGTGCCAGTGGTGGCTGTGATAACTCTGCAGCCATGAGCGACCAAAAGGGCGAGGTTCAGTCTGGCATTGCTGACATAGAAGTGACAATGGTAGAGAGCCATGCAAATCTCAAAATAAGATCCAAGAAACGACCAAAGCAGCTCTTGAAAATAGTATCTAGTTTGCATGGCATGCGTCTCACAATCTTGCACCTAAACGTTACCACAACTGGGGAAATCGTCCTCTATTCTCTCAACGTCAAGGTTGAAGAAGATTGCAAGCTTGGATCAGTGGACGAGATAGCTGCATCTGTATACGAAATGCTGAACAGAATCCAACAAGAGTGA 966 0.4545 MCLSEGERGMALEAVVYPQPQDPFGCAIKDLYSYNNMLEAAAANWGYGDFTLEKEDQASVTFLDNQTENYSHGEWNSSPPSLLPHTMNASNPPSSETSNTQNNLDTSVSTPARPKRRRTKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRALMPESYVQRGDQASIIGGAINFVKELEQRLQFLGAQKEKEGKPDVPFSEFFSFPQYSTSASGGCDNSAAMSDQKGEVQSGIADIEVTMVESHANLKIRSKKRPKQLLKIVSSLHGMRLTILHLNVTTTGEIVLYSLNVKVEEDCKLGSVDEIAASVYEMLNRIQQE* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0581 321 MobiDBLite consensus disorder prediction 70 128 - -
Vra10g0581 321 SMART finulus 136 187 IPR011598 GO:0046983
Vra10g0581 321 PANTHER MAX DIMERIZATION, MAD 10 321 - -
Vra10g0581 321 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 194 IPR036638 GO:0046983
Vra10g0581 321 MobiDBLite consensus disorder prediction 70 110 - -
Vra10g0581 321 Pfam Helix-loop-helix DNA-binding domain 131 182 IPR011598 GO:0046983
Vra10g0581 321 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 181 IPR011598 GO:0046983
Vra10g0581 321 PANTHER HELIX-LOOP-HELIX-LIKE PROTEIN 10 321 - -
Vra10g0581 321 Gene3D - 116 196 IPR036638 GO:0046983
Vra10g0581 321 CDD bHLH_AtFAMA_like 133 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0581 Vra-Chr10 11693616 11695341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0581 10 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 46.708 4.32e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra10g0581 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0581 - - gmx:100777413 548.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0581 10 11693616 11695341 Vra8g1532 8 32274770 32277022 PCT