Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0580 ATGATGAAACACCATCATCACGCAGCCCTATTCCTCCTCCTCCTGGTGGTGGCGGCGGCGTCAATTCCAATCGCCGTCGCGCAGTCCCAGCCGTCGCCCAGTGAATTCACCGACCCAAGACTAAACAGTTTCAACCCCTCTCTAGCCGCAATAATCGTCATATTAGTGGCGGCGCTTTTCGTCATGGCCGTTTTCTCCGTCTACGTACGCCACTGCGCCGATACGCCTTCCAACAGCGTTAGGCCTCTCACGTCCGCACGCTCCAGAAGAGCTGCGCGTGGCCTTGATCCCGCCGTCATCCAAACCTTCCCCATCCTCGAATACTCCGAGGTCAAGATCCACAAGATCGGAAAAGAACCCTTGGAATGCGCGGTGTGTTTGTGCGAGTTTGAAGACACCGAAACGCTGCGTTTGATCCCCAAGTGCGACCACGTTTTCCACCCCGAGTGCATAGACGAGTGGTTGAGCTCCCATACCACGTGTCCCGTGTGCCGCGCCAACCTTGTACCGACAGAATCACAGGAATCTGACGCCAACAACGGTGTTGCCGCTGTTCCCGATCCCCAAATGTTAACGACGGACCTTGAAGCGCAAAACGACGTCGTAGAAGCCGCACCAGAGCAGCAACACGCGGACTCTGACCGTTTCTTGACTGAACCGGAAGTTCTTTCTCTGGAGAAAACGCTGAACCGGAACCGCACGCGTGGATCGCGGTCGAACCGGCCGCGCCGATTCTCGAAGTCGCACTCGACTGGGCACTCGATTGTCCAACCGGGAGAAAATACGGACCGGTTCACTCTGATACTTCCTTTGGAGGTTCGCAAGCAACTAATAAACCGGCAATTGCATCGAGCAAGTAGCTTGATCGTGTTACCGAGGGAAGGTAGTTCGAGGCGGGGTTACCGAACCGGAGGAGAAGGGAGTAGTCGGGGGAAACAATCGAGGCGGTTGGACCGGAGTTTCAAATCGGACCGATGGATTTTCTCAGTAGCTGCGCCGTTTTTCGCTAGGGCGCTGTCTATTAGGTCTCCCAGGGTACGGAACAACGATGTTGATAGAATGTCGTCGTCATCCACCGCGCCGATTATGCCGCCGACGGCCGTTGACTCGGCTCGGCCACCGGTTTAA 1128 0.5621 MMKHHHHAALFLLLLVVAAASIPIAVAQSQPSPSEFTDPRLNSFNPSLAAIIVILVAALFVMAVFSVYVRHCADTPSNSVRPLTSARSRRAARGLDPAVIQTFPILEYSEVKIHKIGKEPLECAVCLCEFEDTETLRLIPKCDHVFHPECIDEWLSSHTTCPVCRANLVPTESQESDANNGVAAVPDPQMLTTDLEAQNDVVEAAPEQQHADSDRFLTEPEVLSLEKTLNRNRTRGSRSNRPRRFSKSHSTGHSIVQPGENTDRFTLILPLEVRKQLINRQLHRASSLIVLPREGSSRRGYRTGGEGSSRGKQSRRLDRSFKSDRWIFSVAAPFFARALSIRSPRVRNNDVDRMSSSSTAPIMPPTAVDSARPPV* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0580 375 MobiDBLite consensus disorder prediction 295 317 - -
Vra10g0580 375 PANTHER RING FINGER DOMAIN-CONTAINING 2 316 - -
Vra10g0580 375 MobiDBLite consensus disorder prediction 350 364 - -
Vra10g0580 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 171 IPR013083 -
Vra10g0580 375 MobiDBLite consensus disorder prediction 349 375 - -
Vra10g0580 375 MobiDBLite consensus disorder prediction 234 248 - -
Vra10g0580 375 Pfam Ring finger domain 122 165 IPR001841 -
Vra10g0580 375 CDD RING-H2_EL5_like 122 165 - -
Vra10g0580 375 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 316 - -
Vra10g0580 375 MobiDBLite consensus disorder prediction 207 233 - -
Vra10g0580 375 SUPERFAMILY RING/U-box 116 171 - -
Vra10g0580 375 MobiDBLite consensus disorder prediction 205 259 - -
Vra10g0580 375 SMART ring_2 123 164 IPR001841 -
Vra10g0580 375 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0580 Vra-Chr10 11665232 11666576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0580 4 338 Rapid Response to Elicitors AT3G05200 43.353 2.43e-85 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0580 K10664 - gmx:100781706 550.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0580 10 11665232 11666576 Vra8g1531 8 32239082 32241043 PCT