Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0568 ATGGCGCTGCCATGGTTGAGATTGAAACCAAAACCAAAAGCTTCGTCACTTTCAATAATCCTAACTACCACACTCATTCTTCTCGTATTCGTCTTCTTCTCGATAAACCCTCTTTCTCCCATTTCAACACCACGGAGGTCACTCCTCATCGCTCCCTCACCGTGTTCCTCCAAATCCGATGGAATCCTCAAATACCAATGTCTCTTCCCACAACACACCGCTCTCTCCATTCCCATCCTCTCCCTATTCCTCCTCCTTCACTTCTACATCCTCATCACCACCGCCCAGGACCACTTCTCCCTCGTCACCACCAAACTCGCCTCCCACCTCGCCCTCTCCCCCAGCATGGCCGCCGTCACGCTTCTCTCCCTCGGCAACGGCGCTCCGGACGTCTTCTCCTCACTCGCAGCCCTCCGCGCCGGCCAATACCGCACTGGCTTCGGCGCTATACTCTCCGCCGGCACCTTCGTCTCCGCCCTCGTCGTCGGCTTTGTCGCCATCTACGCCGCGCCCTTCTCCGTCGATCCCGCGCCTTTCGTTAGGGATGTTCTCTTCTACCTCACCGCTGCAATGTTCCTCTTCTACGTCTACCTCAGCGCCGAGATTTTCCTTTGGCAGGCCGTCGGCTTCGTTGCCTTCTACTTCTTCTTCGTAGGGTTTGTCTTCTACATGGATTTGGGGATGGCGGATCGCGCTCAAAAGAGTTCCGCGGATCTCGAGGGACAGTTGGAATCAGATCCCGACGCTGAAGTTTCGAGATCAGTAGAGGGAGAGAAACGCGCTTCTGGAGTGCGTGGAGCGTTTCGATTGATTTCTAAAACATGGGAGCTTCCTGTGGAAACTGTCCTCAGATTGACGATACCTCAACCAGCACCAGCTCAATGGAGCAGATTTTATGCATCAGCCAATATTGCACTTTGTCCACTGGCCCTCTTGTACGCCTGCAACTCATTCATGCCATTTAATCACTCCATAGTTTTCCTCCTTCCCAACACTCACTTTCCACTCTGGTCAGTTGTTTTCATGGCAAGCTTCTCTCTTGCATTTCTTCATTTTATAATTGAAAAGGAACCCCCCAAAACAGAGCATCTGCCCGTGGTTGTCATGGCATTTGTGATGAGCGTGTTCTGGATATCTACTACGGCTGGAGAGCTGGTGAACTGCCTGGAAGCTATAGGCACACATCTCAAACTGCCCCCAGCACTCCTGGGTCTTACTGTGCTGGCATGGGGAAATTCAGTAGGTGATCTTGTTGCCGATGTTGCAGTTGCTAAAGCCGGTCATCCGGCGATGGCTATGGCGGGATGTTTCGCCGGACCAATGTTCAACATGCTTGTTGGCCTTGGAAGTGCTTTAGTCATACAGACGGCCAATGTATATCCTAGAGCTTATCAGCTTAATTTCCACGTTGGTATAGTGATCGCATTTGTATTCCTGCTTTTAAGCCTTATGGGGTCTCTCTTAGTGATCACTTGGTGCAGATTCAGAGTGCCTAGGTTTTGGGGATTCTGTCTGGTAGGCATCTATGCTGCTTTTACGGCAGCAAGTTTAGGAATAGCCATGTTCTCAGGGTGA 1575 0.5149 MALPWLRLKPKPKASSLSIILTTTLILLVFVFFSINPLSPISTPRRSLLIAPSPCSSKSDGILKYQCLFPQHTALSIPILSLFLLLHFYILITTAQDHFSLVTTKLASHLALSPSMAAVTLLSLGNGAPDVFSSLAALRAGQYRTGFGAILSAGTFVSALVVGFVAIYAAPFSVDPAPFVRDVLFYLTAAMFLFYVYLSAEIFLWQAVGFVAFYFFFVGFVFYMDLGMADRAQKSSADLEGQLESDPDAEVSRSVEGEKRASGVRGAFRLISKTWELPVETVLRLTIPQPAPAQWSRFYASANIALCPLALLYACNSFMPFNHSIVFLLPNTHFPLWSVVFMASFSLAFLHFIIEKEPPKTEHLPVVVMAFVMSVFWISTTAGELVNCLEAIGTHLKLPPALLGLTVLAWGNSVGDLVADVAVAKAGHPAMAMAGCFAGPMFNMLVGLGSALVIQTANVYPRAYQLNFHVGIVIAFVFLLLSLMGSLLVITWCRFRVPRFWGFCLVGIYAAFTAASLGIAMFSG* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0568 524 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 269 523 - -
Vra10g0568 524 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 55 236 - -
Vra10g0568 524 Pfam Sodium/calcium exchanger protein 368 517 IPR004837 GO:0016021|GO:0055085
Vra10g0568 524 Pfam Sodium/calcium exchanger protein 81 222 IPR004837 GO:0016021|GO:0055085
Vra10g0568 524 Gene3D - 300 517 IPR044880 -
Vra10g0568 524 Gene3D - 112 257 IPR044880 -
Vra10g0568 524 PANTHER MITOCHONDRIAL SODIUM/CALCIUM EXCHANGER PROTEIN 55 236 - -
Vra10g0568 524 PANTHER MITOCHONDRIAL SODIUM/CALCIUM EXCHANGER PROTEIN 269 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0568 Vra-Chr10 11540681 11543255 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0568 39 523 Antiporters AT1G08960 69.539 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0568 K13754 - gmx:100775437 810.061