LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra10g0559	ATGCAAGACATTTTCGGATCAGTTCGCAGATCACTGGTATTCCGCGGTTCGCCGGAGAGCGACGAGACATCGCTCGGAGTCGGAGGAAGCCTCGTCGATAAGATCAGTTACTGTATACGAACTTCCAGAGTGTTCTCCAAACCCTCGCCGCCGTCTCCTTCGCCGTCTATTCCTGAGGACGCTGCGCCTCCGATCCGATGGCGGAAAGGCGAGTTGATCGGTTGCGGTGCCTTTGGCCAAGTCTACGTTGGAATGAATATCGATTCCGGAGAGCTTCTGGCGGTTAAACAGGTTTTGATTGCGGCGAGTAGTGCTTCGAAGGAGAAGGCACAGGCTCACATAAAAGAGCTAGAAGAAGAAGTTAAATTACTTAAAGACCTTTCACATCCAAACATTGTTAGATATTTGGGTACGGTCAGAGAAGAGGACACCCTAAATATTCTCTTGGAGTTTGTCCCAGGTGGATCCATATCGTCGCTGTTGGGGAAGTTTGGGGCTTTTCCCGAGGCTGTGATAAGAACCTACACGAAGCAGCTACTACTTGGACTTGAATACTTGCACAAAAATGGAATCATGCACAGAGACATTAAGGGGGCCAATATTCTGGTAGATAATAAAGGGTGTATAAAACTTGCAGACTTTGGGGCATCCAAACAGGTCGTTGAGCTGGCAACCATTTCCGGGGCCAAGTCCATGAAGGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATAGCTTCTCTGCGGACATATGGAGTGTGGGTTGTACTGTAATTGAGATGGCCACTGGAAAGCCTCCCTGGAGTCAGCAATACCAACAAGAGGTTGCTGCTCTCTTCCATATAGGGACAACTAAGTCTCATCCACCAATCCCTGATCATCTTTCTGCTGCAGCAAAAGATTTTCTGCTAAAATGTTTGCAGAAGGAACCGGTCTTGAGGTCATCAGCATCAGAACTGCTGCAGCATCCCTTTGTAACTGGTGAACATATGAATTCTCTTACTTTGTCATCTAATGTCACGGAAAATTTTATAGCTTCATCACCATCATGTACCCCAAATGCCGAATCCATCCTTTGCTCTTCAACAGTAAATCCTCTGGACTCGGGAAATAAACCATTGTGGGGAATGAGCAATGATGATGATGATATGTGTGTGATTGACGACAAAGAAGAGTTCTCGCATAATGATGTTAAATACAAATCACTGATGTCAACTGATATTGAGAGTTTCAACCCAATGTCTGATCCCTCTGATGATTGGGGGTGTAAATTTGATGCAAGTTCAGAACTGGAAAATCGAGAGGTCAATTTTGTCACAGATGAAAATTACATGCCACCTGATCAGTCAGGGGATGATAAGGGGCAGCCAGATTTTTCCTTTCCAGGTGTCCCATCTCTTTCAGAGGAAGATGATGAACTCACAGAGTCAAAAATTAAAGCCTTTTTGGATGAGAAGGCTCTTGAACTGAAAAAACTACAGACACCTTTATATGAAGAGTTTTACAACAGTTTAAATACATCTTGTTCTCCCAATGTTGACAGGACAGGTGATGATACTGCTTCTCGAAAATTTTTGAAATTACCTCCTAAAAGCAGGTCACCTAATCGAGTACCAATCAGCACACCATCTAAAGCCATCGATAATACTGGAAGTCCTGGAAGTAATGGCCAGTCCTCATCTATTGTTGGCCATGTAAATAACCATACTTCTCAGGATATTCCAGCATCTCCCCTTAATGAATGGAAAGGAGTGATAGTTGACTCTCAGCAGCAGCCTAGTAGCCCAAGTCTAAGCTTTTCTGAGAGACAGAGGAAATGGAAAGAAGAGCTTGACCAGGAGCTTGAGAGAAAGCGAGAAATGATGCGTCAGGCTGGCATGGGCGGAAAGACATCTTCACCAAAGGATCGAGCTTTACATCGGCAGAGGGAACGAACAAGATTTGCTTCTCCCAGCAAATAA	1974	0.4488	MQDIFGSVRRSLVFRGSPESDETSLGVGGSLVDKISYCIRTSRVFSKPSPPSPSPSIPEDAAPPIRWRKGELIGCGAFGQVYVGMNIDSGELLAVKQVLIAASSASKEKAQAHIKELEEEVKLLKDLSHPNIVRYLGTVREEDTLNILLEFVPGGSISSLLGKFGAFPEAVIRTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKQVVELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQQEVAALFHIGTTKSHPPIPDHLSAAAKDFLLKCLQKEPVLRSSASELLQHPFVTGEHMNSLTLSSNVTENFIASSPSCTPNAESILCSSTVNPLDSGNKPLWGMSNDDDDMCVIDDKEEFSHNDVKYKSLMSTDIESFNPMSDPSDDWGCKFDASSELENREVNFVTDENYMPPDQSGDDKGQPDFSFPGVPSLSEEDDELTESKIKAFLDEKALELKKLQTPLYEEFYNSLNTSCSPNVDRTGDDTASRKFLKLPPKSRSPNRVPISTPSKAIDNTGSPGSNGQSSSIVGHVNNHTSQDIPASPLNEWKGVIVDSQQQPSSPSLSFSERQRKWKEELDQELERKREMMRQAGMGGKTSSPKDRALHRQRERTRFASPSK*	658

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra10g0559	657	Pfam	Protein kinase domain	68	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra10g0559	657	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE ISOFORM X1	1	612	-	-
	Vra10g0559	657	MobiDBLite	consensus disorder prediction	638	657	-	-
	Vra10g0559	657	ProSiteProfiles	Protein kinase domain profile.	67	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra10g0559	657	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	191	203	IPR008271	GO:0004672\|GO:0006468
	Vra10g0559	657	Coils	Coil	608	628	-	-
	Vra10g0559	657	MobiDBLite	consensus disorder prediction	445	475	-	-
	Vra10g0559	657	ProSitePatterns	Protein kinases ATP-binding region signature.	73	96	IPR017441	GO:0005524
	Vra10g0559	657	CDD	STKc_MAPKKK	66	330	-	-
	Vra10g0559	657	Coils	Coil	100	127	-	-
	Vra10g0559	657	Gene3D	Transferase(Phosphotransferase) domain 1	66	359	-	-
	Vra10g0559	657	MobiDBLite	consensus disorder prediction	539	581	-	-
	Vra10g0559	657	MobiDBLite	consensus disorder prediction	508	657	-	-
	Vra10g0559	657	MobiDBLite	consensus disorder prediction	588	605	-	-
	Vra10g0559	657	MobiDBLite	consensus disorder prediction	606	628	-	-
	Vra10g0559	657	SMART	serkin_6	67	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra10g0559	657	SUPERFAMILY	Protein kinase-like (PK-like)	66	354	IPR011009	-
	Vra10g0559	657	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	1	612	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra10g0559	Vra-Chr10	11493661	11499834	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra10g0559	1	657	MAP Kinase Kinase Kinase	AT1G54960	56.795	0.0	690

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Vra10g0559		Pkinase	8.6e-72	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra10g0559	K20606		-	gmx:100807537	1150.19