Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0557 ATGTCAGATTCACAGTCCAATTCCGAGATCTTCACCGTTCGGATTGTGTCCATCGACTATTACATGGCGCCGCCAATCCCTGACGCCGATATCTGTTATAGTAGCTTCCACGGTGGAGAGGTGAACGAGGTGCCTGTGATAAGAGTGTATGGTTCTACTCCTGCTGGCCAGAAAACTTGCTTGCACGTGCATCGGGCTTTACCCTATTTGTATGTGCCGTGTTCGGATATACCACTTCAACTGGACCAAGGTGATGCATTCACCTATAAGGTAGCTGCTTCTCTTGAGAAAGCCTTAAAGCTTAAAGGCAGTGCTGGTTCTACAAGGCAGCATGTACATGGATGCAGTATTGTAAAAGCAAGGAAATTCTATGGCTATCATTCACTCGAGGAGTTATTTGTAAAGATATACTTATATTATCCTCAAGATGTTTCTCGTGCAGCTAGTCTTCTTTTGGCTTGTGCTGTTCTTGATAAAAGTTTACAGCCATATGAATCACATATTCCCTTTATTCTTCAGTTTCTGGTTGATTACAACTTGTATGGCATGGGTCAATTGCACCTATCAAAGATGAAGTTCCGCCACCCGATACCTGACTCTTTCAAGAAATTAAATATTGGTGGCCAGCATACAAAGGCAGATCTTTCTCATGCATGTCTAGAGTCCAAATATTGGATGGCTTCCACAATTCCATCTGAGTGGATATGGTTACCCACAAGCAAATCCAGTGCTTCTTTAAATGATAAGGCTCACTGTCCTAAACGCCAAAGCATCTGTGAGCTTGAAGGAGATACTTCTGTGAATGAGATTCTTAATCAGCAGTTTAAAATGTATTCATCTCTCTCACAAACATGCTCAGATACCAACATGGTTCAGTCACTTGTACCAATATGGGAGGAACAACAGAAGCGGACTGGGATTCATGAGGCTACTATGCCTTCTGATCCCGGCAAACCACTTCCAGAAGATGTTATGAAACTTTTCTCTGGTAGTCTGGACTTTGAGAAAAAATTTATTGAGTTATGCAGTGAAGTTGGAACCTTATTTTGTACTCCTTCTGGGAAGGAATTGAGCGAAACAGACATAATAGGGTCAGCATCACCACCTGCTACATTATGCAAAAATGCCAAATTCCAAACAGAAGGGACTGACGCCAACCTTGAAATGTTGACTATGGATGAAATTCAGTCAACTGAAATAATTGGATCGGTGGACATAAAGGCTGTTGATAAGGAAGCGAAAAATCTTCTTAAGTGGCTTGCAACTTCTCAAGCTGTAGAGGATATAAACTCTGATGATGATCTTGCTTATGAAACAATCTTGACTCCCTTGTTGCCTGCTGCAACAATTGATAAAGTGTTGGAGGAAGCTAATATCGCCTATGAGAGTGAGTCCCAGAAGGAGTGTCAGGATATTCTAGATTCAACTGATGATATGCTTGAGTTGGAGTTTCCAAAGGAAAAGCCTTCTCTTTCCTTTGGTTACAATTGTCCTATTGGAAATAGGAAATTACCCCAAGTTGATGGTTCTAATGATGACAATTTCTCAGATCAATGTGGTAGTTTGGCTGGAACCTCTTCTTTAGCAGATATAAACAGTGAATTCAAAAGCGCCTCTGAGTACCATGTTCTGCATAGTACAGGCACGAGCACAGTTAGTAAAGATAGAAGGAATAAGAAATGGGGGTCTTTGCCTTTATCTGCGATTGATCAGGTTAATAACGATGGAGAGCGAGCTACTTTACTTGTGACTCATCCAGTTGAAAGTAATATTGGAGATTCTGCTTGCTCAGATCACCTAACAATAAATGAGGTTAGTAGTAGTGCTTGTATTTTAAGGAACAAGGACACAAATGCGTCAGATTCGAAAGAAGTACACAGATCAGTTACCTGTTCTTTGCGGGACTTGATGAGGCGAAAGCGATCCTATCGAGTTGAACAAGCTGAATATGACTCGGGAACTACTAAAAAGCTTCTTTTAGGCAGGCATGAGGAACCAGATGTATGCTTTGGGCAAAAGCAACTGAATTTAAAAACAATGCAAATTGATGTAGAAGAGATGGAAAACCAAAAGATTTGTGAACTTGAAGTTAGCAATCATGCTAATTTATTGCATGGGAAACTGCTCCTTTCAACTGGCAGTGATGGTCCTTTACACGGTAGTAGGCCAAAAGATGAATGTTTTGGTCAACATGAAATGGAAGGTATAGAAGCAAGTACAGTATTGAGGAACTGTACAAAAGGAGGTTCTGCTTTAATGCATGGTGGACCAGGGCTCCATAAGCCTGAAAAATCATGTTTATTTGATTCCATAGATCAATCTGTGGCTTGCAGGGATGAAAACCTTAAGGGTGGCTTGACTTTTACGAAGCATGTAGCTTCTGATACATATATCAAAAGTCCCTTTTTAGACACTCAGTTCAGAACAGCTGCTGTTCATGAAGTCAGAGCTCCCGAGAGCAGTCCACAAACTGATTCTTCTGCTTCAACTAGTGTGCAAAGCGCGTTCATTATTGATAGAGTGTCTGGTAAATATAATTTTGTGGATCAAAATTCTCACCAAAGCTTATCATTTGTGGAACATGATCAGATAATGTTTTGTGAGAATTCTGTGAAGAAAAGTGATGCAAATGATGTGCAAGTATTGCTTAGTGAAAAGCTGGAGAATCACAAGGTGGATGAAAATTTGTTGCATGAGATCATTGACTCTGAACCCACTGACCTAAAGGGTAATCACCCAAAATTAACTGAAGTAACCACAAGCAAGAACCCCCCGGGTGATAAGAATCTTGAAAGTACAGCAATCTGTAATACCTATTTACATTTGGATGAAGATAGCTCTGATGAAATGACAGGTGATGATCTGAATGTCTTTCTTCCAATTTCTGCAAGGAATTCTAAGAAAGGGATGGAAACTTGCAACGAGTATTTTACAAATAAAACCCTTACATCTAATGGGACAAAGGTTGCCAACACTCTCTACCAAAATGATGGCTCTCACCTTTACCTATTAACGCCTAATATTTTGCCTCCTTCTGTGGATACTGTGCATAGATGGCTACTTCATAATGAGAGAGGGCATAGTGTTGAGCATATACATCAAGAAACAGATGCAGAGAACAAGGATGTACCTAAATGTGCTTCTGAGTCTGAACCTCCTATTAGGCCTAAGCTGCATGAAGATGCTGAATCAGAACAGAACCCCAAATGCAATGGAGAAGGACAAACAGAAAGAGTGAAAACACTTCTAGATGACTCACAAGATACTTCTCAGATATCTGCCCCTGATGGAAAATCAATCTATACCCCTCTAAGTCAAATTGGATTTCGAGACCCTGCAAGTGTTGGCTGTGGACAGCAACTGACATTACTTAGTATAGAGATTCTTGCAGACTCTAGAGCAGACCTTTTACCTGATCCTCAATTTGATGGCATCAACATTATAGCTCTTGGTTTTCAGAATGATAGTGACTCTGATGTTGAAGTTCTAGTTCTTTTACGCAGTAAATTCGTAACTTGTCAGAGAAATTTTGATGGTCTATCTGGCTCTAAAGTATTGGTCTTCACTGATGAGAAGCTATTGTTAAAAGAATTTATAAAGATTGTGTCTTCATCTGACCCAGATATTTTGATGGGTTGGGATATTCAAGGGAGTTCTCTTGGTTTTCTTGCAGAAAGAGCATCCCATCTTGGTTTGGGATTACTTAACAATCTTTCTCGCACTCCTTCTGAGTCTTTGATATCTTCTGATGATACGAAAACTTCTGAAAAAGATATGTTGGAGCTGGACATTGATGACACTCCTAGTCTAGATTGTTGTGTGCCAGAAAATTCAATAATCGAGGATGAATGGGGACGGACACATGCTAGTGGAGTTCATGTAGGAGGCAGAATTGTTCTTAATGTATGGCGATTGATCCGTGGAGAAGTTAAGTTGAACTTATATTCAGTTGAATCTGTAGCTGAATCTGTATTGAGGCGGAAAATTCCTTCGTTTCACCACAAAGTGCTGACGAAGTGGTTTTCAAGTGGTCCTGGACGAGCAAGATATCGGTGTATCAAATATGTGATTGAGAGAGTAAAGCTGAACCTTGAGATATTAAACCAACTTGATATGGTGAATCGAACATCAGAACTTGCTCGTGTCTTTGGCATAGAGTTTTTCTCTGTTCTCTCTCGAGGATCACAATACCGTGTTGAGTCCATGTTTCTGAGGTTGGCCCATACACAAAACTACCTTGCTATCTCACCTGGAAATCAACAGGTTGCTTCTCAACCTGCTATGGAGTGCCTTCCTCTAGTAATGGAACCAGAATCTGGATTTTATTCAGATCCTGTTGTTGTGCTTGACTTCCAGTCTTTATATCCATCCATGATAATTGCATACAATCTTTGCTTCTGCACTTGTCTGGGTAAAGTTGTGGGATCAAAGGCTAATACACTTGGAGTTAGTCCCTTCTCACCAGAGCAACATGTTCTGCAGGAGTTAAAGGATCAAATCTTACTCACTCCAAATGGTGTTATGTTTGTACCTTCCAAGGTTCGAAGAGGCATACTGCCCCGCTTATTGGAAGAAATCTTGACTACTAGAATTATGGTAAAACAAGCAATAAAAAAATTGGCTCCTGCAGAGAAAGTTCTTCAGCGGATATTTAATGCGAGACAGCTTGCTTTGAAGCTCATAGCGAATGTAACATATGGTTACACTGCTGCTGGATTTAGTGGTCGCATGCCCTGTGCAGAACTTGCAGACAGTATTGTTCAGTGTGGTCGTAGTACACTGGAAAAGGCTATATCATTTGTAAATCAACATGAAAAGTGGAATGCTAGAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTTAGAGGACGCACTTTGAAAGAGTCTTTCCAAATTGGGAGTGAGATTGCCTCTGCCATCTCTGCTATGAATCCAAACCCTGTCTCCTTGAAGATGGAGAAAGTTTATCACCCATGTTTCCTTCTTACTAAGAAACGATATGTTGGCTACAGTTATGAAAGTCCTCATCAAATGGAACCTGTTTTTGATGCCAAAGGTATTGAGACAGTTCGCAGGGACACATGTGGTGCAGTTGCAAAGATAATGGAGAAGTCTTTGAGACTCTTTTTTCAGCAACAGGATTTATTGGAGGTGAAGACTTATTTGCAACGTCAGTGGAAGAGGATTCTTTCGGGAAAATTCTGCCTTAAAGATTTTATCTTTGCGAAGGAGGTCCGGTTGGGTACCTACAGTGCAAGAATGTCATCACTTCCTCCTGCTGCAATTGTGGCCACTAAGGCAATGACGGTTGACCGCAGGGCAGAACCACGTTATGCTGAGAGAATACCCTATGTTGTAATCCATGGAGAGCCTGGAGCCCGTTTGGTTGATATGGTTGTGGATCCCTTGGAAGTTTTGGCAATTGATTCCCCGTATAGAATAAATGATTTATATTATATTAATAAACAAATAATACCAGCTTTACAACGGGTATTTGGGCTTGTTGCTGCTGACCTCAACCATTGGTTTTCAGAGATGCCTCGTCCCACAAGGGAAGCTTCTGCAAAGCATAAATTAACTTCAAATTCCCATCGAACCAGAATTGATTATTACTATCTTTCAAAACATTGTGTATTATGTGGTAGGTTGGCCCAGGCATCAGCCCATTTATGCAATCAATGTTCAGAAAATGAGGTAGCTGCTTCAACAGCACTAATTAGTAAGACTTCGAAGTTAGAGCAAGCGATGCAACATCTTGTTGCTATATGTCACCATTGTGGAGGCGGGGACAGGCTTCTTGAAAGTGGTGTGAAATGCACGTCCATTTCATGTATGGTGTTTTTTGAGAGGCGGAAGGTTCAGAAAGAACTGCTAGCTGCCACCCATGTTGCTGCAGATAAAGACTTGTACCCGAGATGCAGAGTGGAATGGTTCTGA 5943 0.4084 MSDSQSNSEIFTVRIVSIDYYMAPPIPDADICYSSFHGGEVNEVPVIRVYGSTPAGQKTCLHVHRALPYLYVPCSDIPLQLDQGDAFTYKVAASLEKALKLKGSAGSTRQHVHGCSIVKARKFYGYHSLEELFVKIYLYYPQDVSRAASLLLACAVLDKSLQPYESHIPFILQFLVDYNLYGMGQLHLSKMKFRHPIPDSFKKLNIGGQHTKADLSHACLESKYWMASTIPSEWIWLPTSKSSASLNDKAHCPKRQSICELEGDTSVNEILNQQFKMYSSLSQTCSDTNMVQSLVPIWEEQQKRTGIHEATMPSDPGKPLPEDVMKLFSGSLDFEKKFIELCSEVGTLFCTPSGKELSETDIIGSASPPATLCKNAKFQTEGTDANLEMLTMDEIQSTEIIGSVDIKAVDKEAKNLLKWLATSQAVEDINSDDDLAYETILTPLLPAATIDKVLEEANIAYESESQKECQDILDSTDDMLELEFPKEKPSLSFGYNCPIGNRKLPQVDGSNDDNFSDQCGSLAGTSSLADINSEFKSASEYHVLHSTGTSTVSKDRRNKKWGSLPLSAIDQVNNDGERATLLVTHPVESNIGDSACSDHLTINEVSSSACILRNKDTNASDSKEVHRSVTCSLRDLMRRKRSYRVEQAEYDSGTTKKLLLGRHEEPDVCFGQKQLNLKTMQIDVEEMENQKICELEVSNHANLLHGKLLLSTGSDGPLHGSRPKDECFGQHEMEGIEASTVLRNCTKGGSALMHGGPGLHKPEKSCLFDSIDQSVACRDENLKGGLTFTKHVASDTYIKSPFLDTQFRTAAVHEVRAPESSPQTDSSASTSVQSAFIIDRVSGKYNFVDQNSHQSLSFVEHDQIMFCENSVKKSDANDVQVLLSEKLENHKVDENLLHEIIDSEPTDLKGNHPKLTEVTTSKNPPGDKNLESTAICNTYLHLDEDSSDEMTGDDLNVFLPISARNSKKGMETCNEYFTNKTLTSNGTKVANTLYQNDGSHLYLLTPNILPPSVDTVHRWLLHNERGHSVEHIHQETDAENKDVPKCASESEPPIRPKLHEDAESEQNPKCNGEGQTERVKTLLDDSQDTSQISAPDGKSIYTPLSQIGFRDPASVGCGQQLTLLSIEILADSRADLLPDPQFDGINIIALGFQNDSDSDVEVLVLLRSKFVTCQRNFDGLSGSKVLVFTDEKLLLKEFIKIVSSSDPDILMGWDIQGSSLGFLAERASHLGLGLLNNLSRTPSESLISSDDTKTSEKDMLELDIDDTPSLDCCVPENSIIEDEWGRTHASGVHVGGRIVLNVWRLIRGEVKLNLYSVESVAESVLRRKIPSFHHKVLTKWFSSGPGRARYRCIKYVIERVKLNLEILNQLDMVNRTSELARVFGIEFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVGSKANTLGVSPFSPEQHVLQELKDQILLTPNGVMFVPSKVRRGILPRLLEEILTTRIMVKQAIKKLAPAEKVLQRIFNARQLALKLIANVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFVNQHEKWNARVIYGDTDSMFVLLRGRTLKESFQIGSEIASAISAMNPNPVSLKMEKVYHPCFLLTKKRYVGYSYESPHQMEPVFDAKGIETVRRDTCGAVAKIMEKSLRLFFQQQDLLEVKTYLQRQWKRILSGKFCLKDFIFAKEVRLGTYSARMSSLPPAAIVATKAMTVDRRAEPRYAERIPYVVIHGEPGARLVDMVVDPLEVLAIDSPYRINDLYYINKQIIPALQRVFGLVAADLNHWFSEMPRPTREASAKHKLTSNSHRTRIDYYYLSKHCVLCGRLAQASAHLCNQCSENEVAASTALISKTSKLEQAMQHLVAICHHCGGGDRLLESGVKCTSISCMVFFERRKVQKELLAATHVAADKDLYPRCRVEWF* 1981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0557 1980 Gene3D DNA Polymerase, chain B, domain 1 30 195 - -
Vra10g0557 1980 SMART polmehr3 1119 1625 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vra10g0557 1980 Pfam DNA polymerase family B 1387 1834 IPR006134 GO:0000166|GO:0003677
Vra10g0557 1980 Gene3D - 1688 1854 IPR042087 -
Vra10g0557 1980 PRINTS DNA-directed DNA-polymerase family B signature 1446 1459 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vra10g0557 1980 PRINTS DNA-directed DNA-polymerase family B signature 1555 1567 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vra10g0557 1980 PRINTS DNA-directed DNA-polymerase family B signature 1611 1619 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vra10g0557 1980 CDD DNA_polB_zeta_exo 1118 1368 - -
Vra10g0557 1980 Gene3D - 1149 1429 IPR036397 GO:0003676
Vra10g0557 1980 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 7 1972 IPR030559 GO:0006281|GO:0016035|GO:0019985
Vra10g0557 1980 ProSitePatterns EF-hand calcium-binding domain. 943 955 IPR018247 -
Vra10g0557 1980 Gene3D Helix hairpin bin 1512 1572 - -
Vra10g0557 1980 SUPERFAMILY DNA/RNA polymerases 1433 1847 IPR043502 -
Vra10g0557 1980 ProSitePatterns DNA polymerase family B signature. 1613 1621 IPR017964 GO:0000166|GO:0003676
Vra10g0557 1980 Pfam DNA polymerase family B, exonuclease domain 55 203 IPR006133 -
Vra10g0557 1980 Pfam DNA polymerase family B, exonuclease domain 1119 1259 IPR006133 -
Vra10g0557 1980 MobiDBLite consensus disorder prediction 904 929 - -
Vra10g0557 1980 CDD POLBc_zeta 1394 1842 - -
Vra10g0557 1980 MobiDBLite consensus disorder prediction 913 929 - -
Vra10g0557 1980 SUPERFAMILY Ribonuclease H-like 27 1392 IPR012337 -
Vra10g0557 1980 MobiDBLite consensus disorder prediction 1030 1077 - -
Vra10g0557 1980 MobiDBLite consensus disorder prediction 1030 1067 - -
Vra10g0557 1980 Pfam C4-type zinc-finger of DNA polymerase delta 1879 1952 IPR025687 -
Vra10g0557 1980 Gene3D Palm domain of DNA polymerase 1432 1677 IPR023211 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0557 Vra-Chr10 11454790 11470901 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0557 1123 1962 Core DNA Replication Machinery Family AT5G63960 29.330 6.35e-89 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0557 K02350 - gmx:100777934 3277.26