Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0555 ATGTTTGCTCCGGTTGCGGATGGGGCATGTGAGGGAAGTGGAGTTTCAGGATCCATTATGATTCCTCAACGCTTTGTGTGGCCTTATGGAGGAAGAAGGGTGTTTTTGAGTGGTTCTTTCACGAGATGGTCAGATCATATAGCTATGTCTCCGATGGAGGGATGCCCTGCTGTGTTTCAAGTTGTTTGCAACTTAATGCCGGGGTTTCACCAGTACAAATTTAATGTAGATGGTGAGTGGCGGCACGATGAGCAGCAGCCATCTGTAAGTGGAAGCTGTGGAGTAGTGAATACTATTTATTTAGTGAGAGAACCAGATACCTTACCTTCAATCTTAAGTAATGAGGCACCTGGTAGATCCCAAATGGAGATTGACAATATGGAAGCTACTTCCAGGATGCCCGTGTCTGATCTGGTGGTCTCTCGCCAGCGTATATCTGTGTTCTTGTCTACACATACTGCTTATGATTTGCTTCCTGAGTCAGGGAAGATCATTGCATTGGATATAAATTTACCTGTTAAGCAAGCATTCCATGTTCTTTATGAACAGGGCGTATCTATGGCTCCTCTATGGGATTTTAGCAGGAGTCAGTTTGTTGGAGTTCTTAGTGCAATGGACTTCATTCTAATACTGAAAGAGCTGGGAAATCATGGTTCGAATTTGACTCAAGAACAACTTGAGACTCATACTATAGCAGCCTGGAAAGAGGGAAAATTACAGCTACGCAGAACACTTGATAGTAATGGAGGATCACATCCCTGGCGATTTGTTCATGCCGGACCACATGAATGTCTAAAGGACGTGGCTTTGAAGATTTTGCAAAACAAGGTGTCAACCATTCCTATCATCCATTCTTCTTCAGAGGATGGATCATTTCCTCAACTGCTACATCTTGCTTCCCTATCAGGAATACTGAAAGGTATTTGCAGACATTTTAAGCACTCCTTGAGTTCTTTGCCCATTCTTCAACATCCAGTGGGTTCAATACCTTTGGGTGCATGGGTGCCTAAAGTTGGGGAACCAAATGGACGGCCACTAGCAATGCTGAGACCAACTGCTTCTCTTGGTGCTGCCCTGTCAATGTTTGTTCAAGCTGAAGTTAGCTCAATACCGGTTGTGGATGACAATGATTCTTTGCTGGACATTTATTCAAGAAGCGATATTACAGCATTGGCTAAAGATAAAGCATATGCTCGGACATCTCTCGAGGAAATTAGTATTCACCAGGCATTGCTTTTGGGACAAGATGCAAATTCTCCTTATGGGCTTTACAACGGTCACAGATGTCACATGTGTTTGAGATCTGATTCGTTGCACAAAGTGATGGAGAGGCTGTCTATTCCTGGGGTTAGAAGACTTGTGGTTGTGGAGGCTGGCAGCAAGCGCGTGGAGGGAATTATTTCTTTAAGTGATGTGTTCAGATTCTTGTTAGGCTAG 1437 0.4391 MFAPVADGACEGSGVSGSIMIPQRFVWPYGGRRVFLSGSFTRWSDHIAMSPMEGCPAVFQVVCNLMPGFHQYKFNVDGEWRHDEQQPSVSGSCGVVNTIYLVREPDTLPSILSNEAPGRSQMEIDNMEATSRMPVSDLVVSRQRISVFLSTHTAYDLLPESGKIIALDINLPVKQAFHVLYEQGVSMAPLWDFSRSQFVGVLSAMDFILILKELGNHGSNLTQEQLETHTIAAWKEGKLQLRRTLDSNGGSHPWRFVHAGPHECLKDVALKILQNKVSTIPIIHSSSEDGSFPQLLHLASLSGILKGICRHFKHSLSSLPILQHPVGSIPLGAWVPKVGEPNGRPLAMLRPTASLGAALSMFVQAEVSSIPVVDDNDSLLDIYSRSDITALAKDKAYARTSLEEISIHQALLLGQDANSPYGLYNGHRCHMCLRSDSLHKVMERLSIPGVRRLVVVEAGSKRVEGIISLSDVFRFLLG* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0555 478 Pfam Glycogen recognition site of AMP-activated protein kinase 21 106 IPR032640 -
Vra10g0555 478 Gene3D - 138 313 IPR046342 -
Vra10g0555 478 Gene3D - 314 477 IPR046342 -
Vra10g0555 478 Gene3D Immunoglobulins 18 103 IPR013783 -
Vra10g0555 478 Pfam CBS domain 344 389 IPR000644 -
Vra10g0555 478 Pfam CBS domain 429 477 IPR000644 -
Vra10g0555 478 SUPERFAMILY E set domains 21 103 IPR014756 -
Vra10g0555 478 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 13 478 - -
Vra10g0555 478 CDD E_set_AMPKbeta_like_N 22 102 - -
Vra10g0555 478 SUPERFAMILY CBS-domain pair 344 477 IPR046342 -
Vra10g0555 478 SUPERFAMILY CBS-domain pair 144 314 IPR046342 -
Vra10g0555 478 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 13 478 - -
Vra10g0555 478 ProSiteProfiles CBS domain profile. 342 401 IPR000644 -
Vra10g0555 478 ProSiteProfiles CBS domain profile. 157 219 IPR000644 -
Vra10g0555 478 SMART cbs_1 163 212 IPR000644 -
Vra10g0555 478 SMART cbs_1 428 477 IPR000644 -
Vra10g0555 478 SMART cbs_1 345 393 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0555 Vra-Chr10 11439714 11447756 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0555 - - gmx:100778117 864.374
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0555 10 11439714 11447756 Vra8g1508 8 32019023 32029483 PCT