Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0552 ATGTCAAACTCAAACATCACAAGCTGTGATAGTTGGAGCTTCTCCACAGAGAACACTGGAGAAGATGCAGCAGCAGCAGCAGCACTTAAACACCATAGTCCAAATTCAAACACTTCAACTACAACAAATAATAGCAATGCCTCAAACACAAATTCACAACCACCTCACAAGAAGAAAAGAAACCTACCAGGGAATCCAGACCCGAATGCGGAAGTGGTAGCCCTGTCGCCGAACACCCTGGTGGCCACAAACAGGTTCGTGTGTGAAATATGCAACAAAGGGTTTCAAAGGGATCAGAACCTTCAATTGCACCGTCGAGGGCACAATCTACCGTGGAAGCTGAAACTCAGAACCACCACCGAAGTGAAAAAGCGCGTTTACGTTTGTCCCGAACCCTCCTGTGTCCACCACAACCCGGCTCGAGCGCTGGGCGATCTCACCGGCATTAAAAAGCACTTTAGTAGAAAGCACGGCGAGAAGAAGTGGAAATGTGAAAAGTGTTCTAAGAAATACGCTGTTCATTCTGACTGGAAAGCGCATTCTAAAATATGTGGAACCAAGGAATACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGACAGTTTCATCACACACAGAGCTTTCTGCGATGCACTGAGTGATGACAGCAACAAGTTCAACGAAGCAGGACAACTGCAAAGTATAATGCATGGTTCAAACCTGCAACCACCAATGATCCCAAACCTAGCAGCATCATTACCAATCAATACCAACAATCACAAGCAACCATTACCACTCCCTCACGAGCTCATTGCAGCAATTCCAGCAAAACCCTTTAACAGCAACATGGCAGCATTGCCGAGAAGCCTTTCATCCACCTCTTCTCCCTCTCAACTGTGCTCAAACTCACCACACATCAACATGCTTGAGGAAAAGCCTCAAACAAACATGTCTGCCACGGCACTGCTTCAAAAAGCTGCGCAGATGGGTGCAACAGTGAATAGTAACAGCAACAGCAACGGCATGATGACTGAAACGGGCTTTGCTACAAGCATGGCACCACCATCGTATGGGGTCATGAACCACCACATTCACCACGGTCAACAAGACCTGTCTCAGTATAACTTCCATGCAAATGGGACGGTGATGATGGATGGTGGTGGCAATGGCATGGGAGGAATGAGTGGTTTGGATATGTTTAATGCCATATTGGATCAAAGTAAGGCGTTGTCGAAGATCATAGAGCAGAACAACCGAAGCAGTTATAGTGGTGTTTTGCATGCAATGAATAACGGTAGGTCGAGTTCCATTGATGTTGGTGGAACTAAAGGGAGTGATCAGGATGTGATGACTTTGGACTTGTTGGGGATAGGAGGAGGAGTTGGTGGTGGTGGTGGTGGTGGTGTTGGTGATGGAAGTTTCTTTGGTGGTGAACAGTCTGAACTGAAGATTGAATATGGAGAAATGAGTCAAATAAGAATCCAGGCTTTGAACCATTTTCAGCAACAAACAGCAGCATATGAAAATTAA 1512 0.4597 MSNSNITSCDSWSFSTENTGEDAAAAAALKHHSPNSNTSTTTNNSNASNTNSQPPHKKKRNLPGNPDPNAEVVALSPNTLVATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKLRTTTEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVHSDWKAHSKICGTKEYKCDCGTIFSRRDSFITHRAFCDALSDDSNKFNEAGQLQSIMHGSNLQPPMIPNLAASLPINTNNHKQPLPLPHELIAAIPAKPFNSNMAALPRSLSSTSSPSQLCSNSPHINMLEEKPQTNMSATALLQKAAQMGATVNSNSNSNGMMTETGFATSMAPPSYGVMNHHIHHGQQDLSQYNFHANGTVMMDGGGNGMGGMSGLDMFNAILDQSKALSKIIEQNNRSSYSGVLHAMNNGRSSSIDVGGTKGSDQDVMTLDLLGIGGGVGGGGGGGVGDGSFFGGEQSELKIEYGEMSQIRIQALNHFQQQTAAYEN* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0552 503 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Vra10g0552 503 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 10 453 - -
Vra10g0552 503 SMART c2h2final6 162 182 IPR013087 -
Vra10g0552 503 SMART c2h2final6 86 108 IPR013087 -
Vra10g0552 503 SMART c2h2final6 127 157 IPR013087 -
Vra10g0552 503 Gene3D Classic Zinc Finger 141 219 - -
Vra10g0552 503 MobiDBLite consensus disorder prediction 22 71 - -
Vra10g0552 503 SUPERFAMILY beta-beta-alpha zinc fingers 85 182 IPR036236 -
Vra10g0552 503 Gene3D Classic Zinc Finger 82 109 - -
Vra10g0552 503 Pfam Zinc finger, C2H2 type 86 108 IPR013087 -
Vra10g0552 503 MobiDBLite consensus disorder prediction 31 58 - -
Vra10g0552 503 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 10 453 - -
Vra10g0552 503 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0552 Vra-Chr10 11391941 11395473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0552 37 219 IDZ Gene Family AT5G66730 78.191 6.69e-108 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra10g0552 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0552 - - pvu:PHAVU_006G090800g 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0552 10 11391941 11395473 Vra10g0552 10 11391941 11395473 ECH
Vra10g0552 10 11391941 11395473 Vra8g1101 8 25612162 25616490 PCT