Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0546 ATGAGGTTCATGTTCATCATTACCTTGTTGTTCTTATCATTGCAAAGAGCCAACATTTTGGCTGTGACTACCGCGTGGAATGCAGTAGGAAATGAAAATCAAATCAAGAAAACCTCAGGGGATGGTGACAATGAAAACAAGGAAACTCCTAGACTTGAAAACTTCGGAACTTTGCTTGGACTCAAGTCACCCAACAGGTTTCATACAAGAAGGTCATGCTATAGCGTTTTTTACTCTGACTTTGTCTCCCTCTCGGCTTCTCTGTCATCCAAAACCCAAGCTGAGGCTCCGAATTCGGAGCTCCACGTGCCTCCCGGTTCCTATCACTCACATAGAAGCATGCCACTTCCCAAGATTCAACAACAAGATAGAGGTAACACAAATAGAACAACACTAGTGGCTGCTGTTGGTGGAGTTGCTACCTTAATCTGTGCACTTGGGTGTGTCTGTGTTTGCAAGAGATTTGGAAATCAGAAATGGAAGCCCAATAGGACAATGCCACTCTTTAGCAAACACGGAAGAACAGGAGATACGTGCCATAATTCATCAAGCAATGTGAGTTTAAACTTTGATCCTGATTTTCTTTCCTTGAAACAAACTTATGGGACACAAAGCAGCACTTCAAGCCGTAGTTCCCTAAAACGTGCAATTAATGAGGAGAAAATGTTGAATCGAGAAGAACATGACAATGCCAGCTCTGGCAGTTCTTCCACCAAGGAAACTCTATCTGTTCACGAGGATTTGGAATATGATGGTGGCAAAGCTTCCTCTGCAGAAAGAACTGTCCCTGAAGAATGTCATTCATCATCAGATTTCGAAAGTTTTCATTCATGTGTTGAAACAGAACCACTGTTTCTTTCTCCTGGAAATTTAATTTCTGCGGCAACTCAATTTCCTTGTTCTTCTCACGGTTCAACTTCAAAGGTAGAATCTAACCAATCACCATCCATACCAAAAGACGAAGAGCAAAAGAGGAGTGAAACTTCTCAACCTAGCATTCCTCCCCCGCCAAGTCCACCTCCGTTTTTGAAAGGAAACATGAACAGTGTGATCAAAACCCCACCTTCTCAACAACTGCCAAAACTCAAACCACTTCACTGGGACAAAGTAAGAGCCACGCCAGATCGAACAATGGTGTGGGATACGCTTCGAACAAATTCGTTTGAGTTGGATGAGGAAATGATCGAGTCACTCTTTGGCTACAATTTACAGAATTCAACAAAGAACAACGAAACAATAAGTAAAACCCTCTCCCCTAAGGAGCATGTACTTGAGCCCAAACGGCTGCAAAATATAGCAATACTCTCTAAAGCTCTAAATATCACGGCAGAAGAAGTGTGTGAAGCTCTAATACTAGGGAAGGGTTTGTCTCTGCAACAACTGGAGGCACTGGTAAAAATGGTACCAACGAAAGAAGAAGAGGATAAGCTATTGAACTACAAAGGAAGTATCAATGAACTTGGGTTCGCTGAAAATTTCGTGAGAGTAATGCTTAGCATACCATTTGCTTTTCAACGAGTGGAAGCCATGCTGTACAGAGAAACTTTCGAAGATGAAGTTAATCACATCAGTAACTCTTTCAAAATGCTAGAGGAAGCATGCAAGGAACTAAGGTCAAGCAAGTTCTTCTTGAAATTGCTGGAAGCAGTGCTGAAAACAGGAAACCGCATGAACGTGGGGACAACAAGGGGAGGTGCTAGAGCTTTCAAACTCGATGCCCTTCTCAAGCTTGCCGATGTTAAAGGAACAGATGGTAAAACCACCCTGCTCCATTTCTTTGTTCAGGAGATAGTTCGCTCAGAAGGAACCAAAGCTTCAAAGAGCATCATGGGACAGAAGAGTGAAAAGAGAACGGAGGAAGAAGATTATATAAGAATGGGACTAAAACTTGTGTCTGGTCTTAGTGCTGAGTTATGCAATGTCAAAAAGACTGCGACAATTGACTTAAACGTGCTTGCAAGTTCTGTCTCGAACTTATCAAGTGGGTTGGCTAACATACAGAAGCTAGTAAAAGGGTTGTTGTGTGAAGATGAAAAAAACAAGAGCTTTGTGATTTCTATGAAGTTGTTCCTGAATTATGCAGAAAGAAAGGTGCAAGAGTTGCATGGAGATGAAGCTAGAGTGATGGGTCGGGTAAAAGAAGTAACTGAGTATTTTCATGGGGATGTTAGTGACGAAGAATCGAATCCACTTCAAATATTTGTAATAGTAAGGGACTTTCTGGGTATGGTAAATAATGTGTGCAATGAGCTTAAAAGGTCTATCAAATCCCCTCGCACTATTTGGATTTAG 2292 0.418 MRFMFIITLLFLSLQRANILAVTTAWNAVGNENQIKKTSGDGDNENKETPRLENFGTLLGLKSPNRFHTRRSCYSVFYSDFVSLSASLSSKTQAEAPNSELHVPPGSYHSHRSMPLPKIQQQDRGNTNRTTLVAAVGGVATLICALGCVCVCKRFGNQKWKPNRTMPLFSKHGRTGDTCHNSSSNVSLNFDPDFLSLKQTYGTQSSTSSRSSLKRAINEEKMLNREEHDNASSGSSSTKETLSVHEDLEYDGGKASSAERTVPEECHSSSDFESFHSCVETEPLFLSPGNLISAATQFPCSSHGSTSKVESNQSPSIPKDEEQKRSETSQPSIPPPPSPPPFLKGNMNSVIKTPPSQQLPKLKPLHWDKVRATPDRTMVWDTLRTNSFELDEEMIESLFGYNLQNSTKNNETISKTLSPKEHVLEPKRLQNIAILSKALNITAEEVCEALILGKGLSLQQLEALVKMVPTKEEEDKLLNYKGSINELGFAENFVRVMLSIPFAFQRVEAMLYRETFEDEVNHISNSFKMLEEACKELRSSKFFLKLLEAVLKTGNRMNVGTTRGGARAFKLDALLKLADVKGTDGKTTLLHFFVQEIVRSEGTKASKSIMGQKSEKRTEEEDYIRMGLKLVSGLSAELCNVKKTATIDLNVLASSVSNLSSGLANIQKLVKGLLCEDEKNKSFVISMKLFLNYAERKVQELHGDEARVMGRVKEVTEYFHGDVSDEESNPLQIFVIVRDFLGMVNNVCNELKRSIKSPRTIWI* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0546 763 MobiDBLite consensus disorder prediction 300 314 - -
Vra10g0546 763 MobiDBLite consensus disorder prediction 93 112 - -
Vra10g0546 763 SMART it6_source 351 759 IPR015425 -
Vra10g0546 763 MobiDBLite consensus disorder prediction 221 242 - -
Vra10g0546 763 Pfam Formin Homology 2 Domain 356 744 IPR015425 -
Vra10g0546 763 PANTHER FORMIN-LIKE PROTEIN 6 757 - -
Vra10g0546 763 PANTHER FORMIN-RELATED 6 757 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vra10g0546 763 ProSiteProfiles Formin homology-2 (FH2) domain profile. 352 763 IPR015425 -
Vra10g0546 763 SUPERFAMILY Formin homology 2 domain (FH2 domain) 334 756 - -
Vra10g0546 763 MobiDBLite consensus disorder prediction 300 358 - -
Vra10g0546 763 Gene3D Formin, FH2 domain 346 755 IPR042201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0546 Vra-Chr10 11345539 11348594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0546 334 758 FH2 protein (formin) Gene Family AT3G05470 66.513 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0546 - - gmx:100805407 1003.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0546 10 11345539 11348594 Vra8g1494 8 31870439 31874302 PCT