Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0532 ATGATGATGACAACAATGGAGGGGATGATGGACAAGGCCGTCTTGGATGACGTCATTCGGAGGCTTCTCGAAGGGAAAGGAGGCAAACAGGTTCAGCTCTCTGAGTCCGAGATCCGTCAACTCTGCGTCAATGCCCGACAAATCTTCCTCTCTCAGCCAATTCTTCTCGAGCTCCGTGCCCCCATCCGCATCGGCGGTGATATACATGGTCAGTACCAGGACTTACTGAGGCTTTTTGAATATGGTGGCTTCCCTCCTGCGGCAAACTACTTGTTTCTGGGAGATTATGTGGACAGAGGGAAGCAAAGTTTGGAGACTATTTGTTTGCTTTTGGCCTACAAAATAAGATATCCAGACAAAATTTTTCTCTTGAGGGGAAACCATGAAGAAGCAAAGATTAACCGTATATATGGTTTTTATGATGAATGTAAAAGGAGGTTCAATGTACGGTTATGGAAGATATTCACCGACTGCTTTAACTGTTTGCCGGTGGCTGCTCTCATTGATGAGAAAATACTTTGTATGCATGGGGGACTCTCTCCAGAATTAGAAAATTTAGATCTGATAAGAGAGATTCAAAGGCCTACTGAAATTCCAGATAGTGGTCTCCTTTGTGATCTGCTTTGGTCTGATCCTGATGCCAGCATTGAGGGTTGGGCGGATAGTGACCGAGGCGTTTCATGTACCTTTGGACCTGATGTACTTATGGAGTTTTTGGATAAAAATGACCTTGATCTTGTTTGCAGAGGGCATCAGGTTGTGGAGGATGGATATGAATTCTTTGCTAAAAGAAGATTAGTCACGATATTTTCTGCTCCGAATTATGGTGGAGAATTTGACAATGCTGGTGCATTGTTAAGCGTTGATGATTCTCTTGTATGTTCCTTTGAGATATTGAAACCCGCTGATAGAGCATCAGGAAGTAGTTCTTCGAAAATGAATTTTAAGAAGCAGCCACCCAAACTGGGAAAGATCTAG 978 0.4346 MMMTTMEGMMDKAVLDDVIRRLLEGKGGKQVQLSESEIRQLCVNARQIFLSQPILLELRAPIRIGGDIHGQYQDLLRLFEYGGFPPAANYLFLGDYVDRGKQSLETICLLLAYKIRYPDKIFLLRGNHEEAKINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDEKILCMHGGLSPELENLDLIREIQRPTEIPDSGLLCDLLWSDPDASIEGWADSDRGVSCTFGPDVLMEFLDKNDLDLVCRGHQVVEDGYEFFAKRRLVTIFSAPNYGGEFDNAGALLSVDDSLVCSFEILKPADRASGSSSSKMNFKKQPPKLGKI* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0532 325 Pfam Calcineurin-like phosphoesterase 66 253 IPR004843 GO:0016787
Vra10g0532 325 PRINTS Serine/threonine phosphatase family signature 61 88 IPR006186 GO:0016787
Vra10g0532 325 PRINTS Serine/threonine phosphatase family signature 90 117 IPR006186 GO:0016787
Vra10g0532 325 PRINTS Serine/threonine phosphatase family signature 123 147 IPR006186 GO:0016787
Vra10g0532 325 PRINTS Serine/threonine phosphatase family signature 157 183 IPR006186 GO:0016787
Vra10g0532 325 PRINTS Serine/threonine phosphatase family signature 186 213 IPR006186 GO:0016787
Vra10g0532 325 PRINTS Serine/threonine phosphatase family signature 243 263 IPR006186 GO:0016787
Vra10g0532 325 PRINTS Serine/threonine phosphatase family signature 265 281 IPR006186 GO:0016787
Vra10g0532 325 ProSitePatterns Serine/threonine specific protein phosphatases signature. 124 129 IPR006186 GO:0016787
Vra10g0532 325 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 2 317 - -
Vra10g0532 325 SMART pp2a_7 33 303 IPR006186 GO:0016787
Vra10g0532 325 SUPERFAMILY Metallo-dependent phosphatases 10 303 IPR029052 -
Vra10g0532 325 Pfam Serine-threonine protein phosphatase N-terminal domain 15 59 IPR031675 -
Vra10g0532 325 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP1 ISOZYME 8 2 317 - -
Vra10g0532 325 Gene3D - 7 310 IPR029052 -
Vra10g0532 325 MobiDBLite consensus disorder prediction 304 325 - -
Vra10g0532 325 CDD MPP_PP1_PPKL 14 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0532 Vra-Chr10 11206372 11209566 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0532 62 247 Calmodulin-binding Proteins AT5G63870 33.484 3.86e-30 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0532 K06269 - gmx:100813792 629.402