Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0531 ATGGGGATCGATCTTAAGGCTGGGGGTAAGAGCAAGAAGACCAAAAGAACAGCACCCAAGTCCAACGACATATACCTCAAACTACTTGTCAAGCTGTATCGATTCCTTGTTCGGAGAACTGGCAGCAATTTCAATGCTGTGATACTCAAGCGCTTGTTCATGAGTAAGGTGAACAAGCCTCCAATTTCGTTGTCGAGGTTGATTAAGTATACAAAAGGGAAGGAAGATAAAATTGCTGTTATAGTGGGGACTGTAACTGATGATATCAGAGTATATGAAGTTCCGCCATTGAAAATTACAGCACTCAGGTTTACAGAGAGGGCACGTGCAAGAATAGAGAAGGCAGGTGGTGAATGCTTGACATTTGATCAACTTGCCCTTAGGGCTCCTTTGGGACAGAATACGGTCCTTTTAAGAGGCCCAAAGAATGCTCGGGAAGCTGTGAAACATTTTGGTCCTGCTCCTGGTGTGCCACACAGCCATACCAAACCCTATGTTCGGTCTAAGGGAAGAAAGTTTGAGAAGGCAAGAGGAAGAAGGAACAGCAGAGGATTTAGAGTTTAA 564 0.445 MGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKYTKGKEDKIAVIVGTVTDDIRVYEVPPLKITALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFRV* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0531 187 SUPERFAMILY Ribosomal proteins L15p and L18e 20 139 IPR036227 -
Vra10g0531 187 PANTHER 60S RIBOSOMAL PROTEIN L18-1-RELATED 1 186 - -
Vra10g0531 187 Pfam Ribosomal protein 60S L18 and 50S L18e 2 187 IPR021131 -
Vra10g0531 187 Gene3D - 1 187 - -
Vra10g0531 187 PANTHER 60S RIBOSOMAL PROTEIN L18 1 186 IPR000039 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0531 Vra-Chr10 11203142 11205084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0531 3 187 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 78.495 5.74e-103 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0531 K02883 - gmx:100527681 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0531 10 11203142 11205084 Vra10g0531 10 11203142 11205084 ECH
Vra10g0531 10 11203142 11205084 Vra8g1483 8 31774716 31776985 PCT