Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0523 ATGGGGGGACAGAATCAGAGACTCGTCATCATTGGCGTTTCTACCTTCTTGCTGGTGGCTATGGTGGTAGCCGTTACGGTTAGCGTGAGCCTGAACAACAAGGGAGAAAAGGATGCTGAAAATGAAGAAACAAAATCACACGTAGCTTCCACCATGAAAGCGGTGAAAACCCTTTGCGCACCCACGGAGTACCAGAAAGAATGCGAGGACAATCTCAATGCAAACGCCGGCAACATCACTGATCCCAGGGAACTCATAAAAGTCGCCTTCAACGTCACCATCGCCAGAATCAGCGAGGGGCTAGGGCAAACCAAGCTCATGCAGGACGTCGAGAGCGATCCCAGAACCAAGGAGGCCCTCGACACTTGCAAGCAACTCATGAACCACTCCATCGAAGAGTTCAATCGCTCCCTCCAGAGGTTCAGCAAGTTCGACCTCAACAACATCGATCGCATCCTCACCAGTCTCAAGGTGTGGCTCAGCGGCGCCGTCACGTACCAGGAATCGTGCCTTGACGCGTTCGACAACACCACCACTGACGCTGGCAAGAAGATGCAGGAGCTCTTGCAAACCGCCATGCACATGACCAGCAACGGCCTCGCTATCATCTCCGAGCTGTCGAAGACTTTCTCCGAGATGCACGTCCCCAAGTCTGGCCGCCGCCTCTTGAAGGCCGCTGACGATTTGCCCGTTTTTGGCAACGAAAACGACGACTTTGACGTTCCCGATTGGGTTGAGAACCGCGTTGGCCTTCGCAGACTCTTGCATATGACTGGACGCAAACAAATGGCCCATGTAGTGGTTGCCCAGGATGGCAGTGGAAATTTCACCACCATCAACGAAGCCTTGAAGCACGTGCCCATGAAAAACCTAAGGCCTTTTATCATCTACATCAAGGAGGGCGTTTACGACGAGTACGTGGAAGTTTCCAGGAATATGACCCATGTCGTCTTTATCGGTGATGGTGGAAGGAAGTCGAGGATCACAGGCAGCAAAAACTTCATCGATGGTGTGGGAACCTACAAAACCGCCAGTGCTGCCATTATTGGAGATTTCTTCGTCGCCATAGGTATGGGATTTGAAAACACAGCCGGCGCTGAAAAACATCAAGCCGTGGCATTGAGGGTTCAATCTGACAGGTCCATCTTCTACAAGTGCCGAATGGATGGGTATCAAGACACTCTTTACGCCCACGCCATGCGTCAATTCTACCGCGATTGCACCATTACTGGTACCATAGACTTTGTTTTCGGCGATGCAGTGGCTGTGCTCCAGAACTGCACATTCGTTGTCCGAAAGCCATTGGAAAACCAGCAATGCATTGTGACAGCACAAGGTAGAAAGGAGAGCAACCAGCCATCGGGTCTGGTGATCCATGGAGGATCGATTGTGTCAGACCCGTTGTATTACCCAGTTAGGTTCGACAACAAGGCGTACTTGGCTCGTCCATGGAAGAATTTCTCAAGGACCATCTTCATGGATTCATTCATCGATGACTTGATCACAGCCGACGGCTACATGCCATGGCAGACATTGGAAGGTTTAAGCGGAATGGACACATGTTTCTACGCTGAGATAAACAACCATGGCCCTGGTGCAGACATATCGAAGCGCGTGAAATGGGAAGGAATCAAGTCCCTGACGAAGGACGTGGCAACAACATTCTTGCCATCACCGTTCTTCCATGGAGATGACTGGATTAGGGTCACAAGGGTTCCTTACGATTCTGGCCTGCCCTCCGCCACTCACTGA 1752 0.5143 MGGQNQRLVIIGVSTFLLVAMVVAVTVSVSLNNKGEKDAENEETKSHVASTMKAVKTLCAPTEYQKECEDNLNANAGNITDPRELIKVAFNVTIARISEGLGQTKLMQDVESDPRTKEALDTCKQLMNHSIEEFNRSLQRFSKFDLNNIDRILTSLKVWLSGAVTYQESCLDAFDNTTTDAGKKMQELLQTAMHMTSNGLAIISELSKTFSEMHVPKSGRRLLKAADDLPVFGNENDDFDVPDWVENRVGLRRLLHMTGRKQMAHVVVAQDGSGNFTTINEALKHVPMKNLRPFIIYIKEGVYDEYVEVSRNMTHVVFIGDGGRKSRITGSKNFIDGVGTYKTASAAIIGDFFVAIGMGFENTAGAEKHQAVALRVQSDRSIFYKCRMDGYQDTLYAHAMRQFYRDCTITGTIDFVFGDAVAVLQNCTFVVRKPLENQQCIVTAQGRKESNQPSGLVIHGGSIVSDPLYYPVRFDNKAYLARPWKNFSRTIFMDSFIDDLITADGYMPWQTLEGLSGMDTCFYAEINNHGPGADISKRVKWEGIKSLTKDVATTFLPSPFFHGDDWIRVTRVPYDSGLPSATH* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0523 583 CDD PMEI-like_3 57 208 - -
Vra10g0523 583 TIGRFAM PME_inhib: pectinesterase inhibitor domain 46 206 IPR006501 GO:0004857
Vra10g0523 583 Pfam Pectinesterase 265 564 IPR000070 GO:0030599|GO:0042545
Vra10g0523 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 49 208 IPR035513 -
Vra10g0523 583 PANTHER PECTINESTERASE 8 580 - -
Vra10g0523 583 Gene3D - 260 578 IPR012334 -
Vra10g0523 583 Pfam Plant invertase/pectin methylesterase inhibitor 54 202 IPR006501 GO:0004857
Vra10g0523 583 PANTHER PECTINESTERASE 8 580 - -
Vra10g0523 583 SUPERFAMILY Pectin lyase-like 265 576 IPR011050 -
Vra10g0523 583 ProSitePatterns Pectinesterase signature 2. 409 418 IPR033131 -
Vra10g0523 583 ProSitePatterns Pectinesterase signature 1. 290 309 IPR018040 -
Vra10g0523 583 SMART PMEI_2 50 202 IPR006501 GO:0004857
Vra10g0523 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 53 207 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0523 Vra-Chr10 11117391 11119675 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0523 4 578 Carbohydrate Esterase AT3G05610 47.924 0.0 584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0523 K01051 - gmx:100801686 947.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0523 10 11117391 11119675 Vra8g1480 8 31761067 31762909 PCT