Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0522 ATGGCTATTTACAAGGTATCCTTGGGCTTATTCTTCGTCTTCTTTCTAAGCATTTTCTTTAACTCTGCATTTGTTGTATCTTCATCGGATTCCTCCGATACCATTTGCAACCTCACACCATATCCATCATTCTGCGAATCCAACTCACCTTATGGCCATGGTGACATACACGAATATGGTCGTTTTTTCGTAGACAAATCCTTGTCATCCTCAAAGAAGTTTCTCTCATTACTCTCTCATTACCTTAAATCGCCATCCAAGTTCTCAAACTCCACAATCCTTGCCATTCAAGATTGTCATCTTCTAGCTGATCTAAACAAGAGTTTTTTGTCCAAGACCCTAAAAACCATCAATTTCACTGATGCCCTCGGTGGCTCTGAAGCTGAAAAATTTCACACTCTGCTTAGTGCTACACTGACCAACCAAAAAACTTGCTTAAACAGCCTTCAAGAAACCACGTCAAACCCCGACAAAGACCTGCTAACGCATCTTTCCAATGGAACCAAGCTTTATAGCATATCTCTTGCCATCTTCAAGAGGGGATGGAAAGCCAAGAATAACACAGAGAGAAAACTTGAAAGAAATGATCACTTCATGTGGGAACAGAAGCTGTACGACCTAATCAGAAGAAAAGGAAGAAAACTTCTTCAGTTGGGTCCAGACAACGTTGTAGTTAACCAAAGCGTGGTGGTGAACCCAGACGGTTCTGGAAACTACACTACAATCAATGATGCAGTGGCTGCTGCTCCAAATAACTCACAGGGTAGTAACGGGTTTTTCGTCATTCATGTGGTCGGTGGAGTATATGAAGAGTACGTTTCCATTCCCAGACAGAAGCAGTACCTGATGATGATAGGAGATGGAATTAACCAGACCATAATCACGGGCAATCACAGCGTGGTTGATGGTTGGACTACTTTCAATTCTGCTACATTCGCCGTGACTGCTCAAGGTTTTGTGGCAATCAACATAACATTTCGCAACACAGCAGGAGCAATCAAGCACCAAGCAGTAGCCCTAAGAAGCGGAGCGGACTTGTCTGCATTTTACAATTGTAGCTTTGAAGGGTACCAAGACACGTTGTACACCCATTCTCTTCGGCAATTCTACAGAAACTGTGATATTTATGGTACAGTGGACTTCATATTTGGTAATGCAGCAGTGGTCTTGCAAAACTGTAACATCTACCCTAGACTCCCAATGCAAAACCAATTCAATGCCATTACTGCACAGGGTAGGACTGACTTGAACCAAAATACTGGAACCTCCATACACAATTGTACCATAACAGGGGCGAGTGACTTGGCCGGAAGTAATGGCACCACAAAAACGTACCTAGGAAGACCCTGGAAGCAATATTCACAAACAGTTTATATGCAGTGTTTCATGGACAGTTTGATAGATCCACTGGGTTGGGTAGCTTGGTCGGGGGACTTTGCTTTGGACACCCTTTATTATGCGGAATTTGATAATCGTGGGCCTGGATCTGATACCAGTAATAGGGTTACTTGGCTTGGGTACCATGTGATTAATGATACAGATGCAGTTAAGTTTACAGTTTCTAATTTCATACAAGGTGGTTTCTGGCTGCCTGCAACAGGACTACCTTACTCTCCTGATTTACTTACACCTTAG 1635 0.4287 MAIYKVSLGLFFVFFLSIFFNSAFVVSSSDSSDTICNLTPYPSFCESNSPYGHGDIHEYGRFFVDKSLSSSKKFLSLLSHYLKSPSKFSNSTILAIQDCHLLADLNKSFLSKTLKTINFTDALGGSEAEKFHTLLSATLTNQKTCLNSLQETTSNPDKDLLTHLSNGTKLYSISLAIFKRGWKAKNNTERKLERNDHFMWEQKLYDLIRRKGRKLLQLGPDNVVVNQSVVVNPDGSGNYTTINDAVAAAPNNSQGSNGFFVIHVVGGVYEEYVSIPRQKQYLMMIGDGINQTIITGNHSVVDGWTTFNSATFAVTAQGFVAINITFRNTAGAIKHQAVALRSGADLSAFYNCSFEGYQDTLYTHSLRQFYRNCDIYGTVDFIFGNAAVVLQNCNIYPRLPMQNQFNAITAQGRTDLNQNTGTSIHNCTITGASDLAGSNGTTKTYLGRPWKQYSQTVYMQCFMDSLIDPLGWVAWSGDFALDTLYYAEFDNRGPGSDTSNRVTWLGYHVINDTDAVKFTVSNFIQGGFWLPATGLPYSPDLLTP* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0522 544 Pfam Plant invertase/pectin methylesterase inhibitor 33 177 IPR006501 GO:0004857
Vra10g0522 544 PANTHER PECTINESTERASE 10 539 - -
Vra10g0522 544 SUPERFAMILY Pectin lyase-like 226 540 IPR011050 -
Vra10g0522 544 Pfam Pectinesterase 229 526 IPR000070 GO:0030599|GO:0042545
Vra10g0522 544 SMART PMEI_2 27 177 IPR006501 GO:0004857
Vra10g0522 544 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 180 IPR035513 -
Vra10g0522 544 ProSitePatterns Pectinesterase signature 2. 375 384 IPR033131 -
Vra10g0522 544 PANTHER PECTINESTERASE 10 539 - -
Vra10g0522 544 CDD PMEI-like_3 34 183 - -
Vra10g0522 544 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 180 IPR035513 -
Vra10g0522 544 Gene3D - 222 541 IPR012334 -
Vra10g0522 544 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 179 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0522 Vra-Chr10 11111323 11113909 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0522 6 543 Carbohydrate Esterase AT4G02330 54.355 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0522 K01051 - gmx:100801141 844.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0522 10 11111323 11113909 Vra10g0522 10 11111323 11113909 ECH
Vra10g0522 10 11111323 11113909 Vra8g1479 8 31758189 31760433 PCT