Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0521 ATGATGGCCATGCTAAGTTTCCTTTTCATTCTGGTGCTTTTACCCTCCTTTGAGGCTCTCTCATATGAAGGCATTCCCTCAGAAATCCAAACCCAAGACATGCAAGCATTGATTGCACAAGCATGCATGGATATTGAAAACCAAAACTCCTGCCTCACAAACATCCACAACGAGCTCACTAAAATAGGCCCTCCAAGCCCCACTTCGGTGATGAGTGCAGCACTGAAGGCCACACTCAACGAAGCAATAGTGGCCATTGACAACATCACAAAGATCACCACATTCTCCGTCAGCTACCGCGAGCAACAAGCCATAGAAGATTGCAAGGAGCTCTTGGATTTCTCGGTTTCTGAGCTCGCATGGTCCTTGGGAGAGATGAGGAGGATTCGCGCAGGAGATAACAACGTGCAATACGAGGGAAACCTTGAAGCCTGGCTTAGTGCTGCACTGAGTAACCAAGACACGTGCCTTGAAGGCTTTGAAGGTACAGACAGACGCCTCGAGAGCTACATCAGTGGAAGCTTGACACAAGTCACACAACTCATCAGCAATGTTTTGTCCCTGTACACTCAGTTGCATACCTTACCATTTAAGCCTCCGAGAAACGCTACTACTGCGGAATCTGATGGAACCTCGGAGTTTCCTGAATGGATGACTGAGGGTGATCAAGAGTTGCTCAGAGCCAAGCCACATGGTGTTCATGCGGATGCAGTTGTTGCTTTGGATGGGAGTGGTCACTATCGCTCCATCGCCGAAGCTGTCAATGCAGCTCCCAGTCACAGTGAAAGAAGGTATATTATTTACGTGAAAAAAGGACTTTACAAGGAGAATATTGACATGAAGAAGAAGATGACCAACATCATGCTCGTCGGAGATGGTATAGGTCAAACCATTATCACCAGCAACCGGAATTTCATGCAGGGATGGACCACCTTTCGAACGGCCACGCTTGCTGTGTCTGGGAAGGGTTTCATTGCAAGGGACATGTCGTTCCGGAACACAGCAGGGCCGGTGAACCATCAAGCGGTGGCGCTGCGTGTGGATTCAGACCAATCAGCCTTCTACAGGTGCAGTATGGAAGGGCACCAAGACACGCTCTACGCTCACTCCCTACGACAGTTCTACCGTGAGTGCGAAATCTATGGCACCATAGACTTCATTTTCGGCAACGGTGCTGCAGTACTGCAAAACTGCAAAATATACACCAGGGTCCCACTTCCCTTGCAGAAGGTTACCATCACGGCGCAAGGCAGAAAAAGCCCACACCAGAGCACGGGCTTCACCATCCAGGACAGCTATATTCTCGCCACCCAGCCCACCTACTTGGGCCGGCCGTGGAAACAATACTCCAGGACGGTTTACATTAACACTTACATGAGTGGGCTTGTCCAGCCCCGAGGCTGGCTTGAGTGGCTCGGAAACTTTGCCCTCAACACTTTGTGGTACGGTGAGTACAGAAATTATGGGCCCGGTGCATCGGTGGTGGGCCGGGTGAGATGGCCCGGTTATCATGTAATTAAGGATGCCTCCACCGCTAGTTTTTTCACCGTTCAGAGGTTCATTAATGGTGACACGTGGCTGCCAAGGACAGGTGTCAAGTTCACAGCAGGTCTCACCAATTGA 1623 0.5028 MMAMLSFLFILVLLPSFEALSYEGIPSEIQTQDMQALIAQACMDIENQNSCLTNIHNELTKIGPPSPTSVMSAALKATLNEAIVAIDNITKITTFSVSYREQQAIEDCKELLDFSVSELAWSLGEMRRIRAGDNNVQYEGNLEAWLSAALSNQDTCLEGFEGTDRRLESYISGSLTQVTQLISNVLSLYTQLHTLPFKPPRNATTAESDGTSEFPEWMTEGDQELLRAKPHGVHADAVVALDGSGHYRSIAEAVNAAPSHSERRYIIYVKKGLYKENIDMKKKMTNIMLVGDGIGQTIITSNRNFMQGWTTFRTATLAVSGKGFIARDMSFRNTAGPVNHQAVALRVDSDQSAFYRCSMEGHQDTLYAHSLRQFYRECEIYGTIDFIFGNGAAVLQNCKIYTRVPLPLQKVTITAQGRKSPHQSTGFTIQDSYILATQPTYLGRPWKQYSRTVYINTYMSGLVQPRGWLEWLGNFALNTLWYGEYRNYGPGASVVGRVRWPGYHVIKDASTASFFTVQRFINGDTWLPRTGVKFTAGLTN* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0521 540 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 193 IPR035513 -
Vra10g0521 540 Pfam Pectinesterase 236 524 IPR000070 GO:0030599|GO:0042545
Vra10g0521 540 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 192 IPR035513 -
Vra10g0521 540 TIGRFAM PME_inhib: pectinesterase inhibitor domain 4 193 IPR006501 GO:0004857
Vra10g0521 540 CDD PMEI-like_4 65 192 - -
Vra10g0521 540 Gene3D - 231 538 IPR012334 -
Vra10g0521 540 PANTHER PECTINESTERASE 7 538 - -
Vra10g0521 540 ProSitePatterns Pectinesterase signature 2. 380 389 IPR033131 -
Vra10g0521 540 SUPERFAMILY Pectin lyase-like 233 537 IPR011050 -
Vra10g0521 540 Pfam Plant invertase/pectin methylesterase inhibitor 37 188 IPR006501 GO:0004857
Vra10g0521 540 SMART PMEI_2 33 188 IPR006501 GO:0004857
Vra10g0521 540 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 7 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0521 Vra-Chr10 11104398 11106462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0521 9 540 Carbohydrate Esterase AT3G05620 64.154 0.0 712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0521 K01051 - gmx:100810565 1006.13