Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0517 ATGCCGCCACGTCAAACGCCCTTCTTCATCGTCTTTCTATGTTTTCTCAATGCCTGTTCTTCTGTCTTCGCCACCCAGTTTGACTTTGGAACCTTAACCATGAGCACGCTGAAGCTTCTCGGGGATGCCCATTTGAACAACAACACCGTCAGCCTCACCGGCGACCCCGCCGTCCCAAACTCCGCTGCTGGCAGAGCGCTTTACTCAGACCCCGTCAGATTCCGGCAACCGGGGTCCCTTTCTCCGGCGAGCTTCTCCACCTTCTTCTCCTTCTCTGTCACCAACCTCAATCCATCCTCCGTCGGCGGCGGCCTCGCCTTCGTCATCTCACCGGACTCCAGCGCTGTCGGCGATTCCGGCGGCTTCCTCGGTCTGCAAAACCCCGCCGCCGCCACTGGCGGTGGCGGCGGGTTCGTCGCTGTTGAATTCGACACCCTGATGGACGTGGAATTCAGCGACATTAATGGAAACCATGTGGGGTTGGACTTAAACAGCGTTGTTTCGGCTCAAGTTAGCGACTTGGGAAGCGTCGGAGTGGATCTTAAAAGCGGGGACTCGGTGAACGCGTGGATCGAGTACGATGGAAGCAGCAAAGGGTTGCGCGTGTGGGTCTCGTACTCGACTGTGAGGCCGAAAGATCCGATTTTGAAGGTGGATCTCGATGTCGGTATGTATGTTAATGATTTCATGTATGTGGGGTTTTCTGGGTCTACCCAAGGTAGCACGGAGGTGCACAGTGTTGAATGGTGGAGTTTCAATTCCTCTTTCGATTCCGCGGCGGCTCCTGCCACCACGTCAGCACCCTCCGCCACTTCACCACCTGAGCAGAAGGAAAGTAAGTCTTCTAGGAAGGGTACTGTGGGGGCTGTTGCTGGGGTTGTGACTGCTGGTGCTTTTGTTCTTGCTCTCTTTGCTGGTGCATTCATTTGGGTGTATTCTAAGAAGGTGAAGCGAATGAAGAAATTTGATCAATCTATTGAGTCGGAGATTATTAGACTGCCTAAGGAGTTTAGCTACAAGGAGCTGAAATTTGCCACTAAGGGGTTCAGTGCTAATAGGGTCATTGGTCATGGTGCTTTTGGGACCGTGTACAAGGGTGTGCTGCCTGAGAGTGGTGACACTGTTGCCGTGAAGAGGTGTAACCATAGTGGTCAAGGTAAGAGTGAGTTTTTGTCCGAGTTGTCTATAATTGGGAGTCTCAGGCATCGGAATCTGGTTCACCTTCAAGGTTGGTGCCATGAGAAAGGTGAGATTTTGTTGGTGTATGACTTGATGCCCAATGGGAGTTTAGATAAGGCTTTGTATGAGGCTAGGATGCCTTTGTCATGGCCTCACAGACTCAAAATTTTGTTAGGTGTGTCATCTGTGTTGGCCTACTTGCATCACGAATGTGAAAACCAGGTAATTCATAGGGACATTAAGACTAGTAACATTATGTTAGATGAAGGGTTCAATGCTCGGTTAGGCGATTTTGGTTTAGCAAGACAAACACAACATGATAAGTCTCCTGATGCCACTGTGGCTGCCGGAACAATGGGGTATCTTGCCCCAGAGTATGTGCTTACTGGTAGAGCAACTGAGAAAACTGATGTGTTTAGCTATGGTGCGGTGGTTCTTGAGGTGGCCTGTGGGAGGAGGCCTATTGAGAAAGATGCCGCTGCAAATGGTAAAGTTGGGGTTAGCAGCAATTTGGTGGAATGGGTTTGGAGTTTGCATCAAGAAGGTAAGTTGCTAACGGCAGCTGATCCAAGACTTGAAGGTGAGTTTGAAGAAGGGGAAATGAGGAGGGTACTCTTAGTTGGGTTAGCTTGTTCACACCCAGATTCAATGGCAAGACCAACTATGAGGGGTGCGGTTCAGATGCTGCTTGGTGAGGCTGAAGTGCCTATTGTCCCTAGAGCCAAACCGTCTACTAGTTACAGCACTTCTCACCTCTTATTGAGCCTGCAAGATAGTGAATCTGACTGTAATAATGCTATGATCACCATCTCTACCTCCTCTTCAGAGAACACCCTCAGTGGCAGACTTATACTCTGA 2037 0.5017 MPPRQTPFFIVFLCFLNACSSVFATQFDFGTLTMSTLKLLGDAHLNNNTVSLTGDPAVPNSAAGRALYSDPVRFRQPGSLSPASFSTFFSFSVTNLNPSSVGGGLAFVISPDSSAVGDSGGFLGLQNPAAATGGGGGFVAVEFDTLMDVEFSDINGNHVGLDLNSVVSAQVSDLGSVGVDLKSGDSVNAWIEYDGSSKGLRVWVSYSTVRPKDPILKVDLDVGMYVNDFMYVGFSGSTQGSTEVHSVEWWSFNSSFDSAAAPATTSAPSATSPPEQKESKSSRKGTVGAVAGVVTAGAFVLALFAGAFIWVYSKKVKRMKKFDQSIESEIIRLPKEFSYKELKFATKGFSANRVIGHGAFGTVYKGVLPESGDTVAVKRCNHSGQGKSEFLSELSIIGSLRHRNLVHLQGWCHEKGEILLVYDLMPNGSLDKALYEARMPLSWPHRLKILLGVSSVLAYLHHECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTQHDKSPDATVAAGTMGYLAPEYVLTGRATEKTDVFSYGAVVLEVACGRRPIEKDAAANGKVGVSSNLVEWVWSLHQEGKLLTAADPRLEGEFEEGEMRRVLLVGLACSHPDSMARPTMRGAVQMLLGEAEVPIVPRAKPSTSYSTSHLLLSLQDSESDCNNAMITISTSSSENTLSGRLIL* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0517 678 ProSiteProfiles Protein kinase domain profile. 349 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0517 678 Gene3D Transferase(Phosphotransferase) domain 1 425 628 - -
Vra10g0517 678 Pfam Legume lectin domain 25 264 IPR001220 GO:0030246
Vra10g0517 678 MobiDBLite consensus disorder prediction 263 284 - -
Vra10g0517 678 Gene3D - 23 270 - -
Vra10g0517 678 CDD STKc_IRAK 355 622 - -
Vra10g0517 678 SUPERFAMILY Protein kinase-like (PK-like) 332 658 IPR011009 -
Vra10g0517 678 SMART serkin_6 349 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0517 678 ProSitePatterns Protein kinases ATP-binding region signature. 355 378 IPR017441 GO:0005524
Vra10g0517 678 Gene3D Phosphorylase Kinase; domain 1 310 424 - -
Vra10g0517 678 Pfam Protein kinase domain 351 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0517 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Vra10g0517 678 PANTHER - 13 670 - -
Vra10g0517 678 ProSitePatterns Legume lectins beta-chain signature. 139 145 IPR019825 -
Vra10g0517 678 CDD lectin_legume_LecRK_Arcelin_ConA 25 256 IPR001220 GO:0030246
Vra10g0517 678 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.2 13 670 - -
Vra10g0517 678 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 257 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0517 Vra-Chr10 11077453 11081444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0517 8 662 Receptor kinase-like Gene Family AT3G53380 65.462 0.0 867
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra10g0517 Pkinase 3.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0517 - - var:108341139 1256.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0517 10 11077453 11081444 Vra6g0759 6 7370078 7373103 PCT