Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0516 ATGGTTCTCTCCAAAACCGCTTCGGAATCCGACGTTTCTGTCCACTCCACCTTCGCTTCTCGTTATGTGAGAACTTCACTTCCCAGGTTCAGGATGCCGGAGGAGTCGATTCCAAAGGAAGCAGCGTACCAGATCATAAACGATGAGTTGATGTTGGATGGGAACCCAAGGTTGAACTTGGCTTCGTTTGTGACGACATGGATGGAACCTGAGTGTGATAAACTCATCATGGCTTCCATCAATAAGAACTATGTTGACATGGATGAGTACCCTGTCACCACTGAGCTTCAGAACCGATGTGTGAACATGATAGCTCATCTTTTTAATGCACCACTTGAAGAATCTGAAACTGCTGTTGGTGTTGGCACGGTCGGTTCATCAGAGGCCATAATGTTGGCTGGATTGGCCTTCAAAAGGAGGTGGCAAAACAGAAGGAAAGCAGAGGGAAAGCCTTATGACAAACCCAACATTGTCACTGGAGCCAACGTTCAGGTTTGCTGGGAGAAATTCGCAAGGTACTTCGAGGTGGAGTTGAAGGAAGTGAAGCTGCGTGATGGATACTATGTAATGGATCCTGACCAGGCTGTGGAATTGGTGGATGAGAACACTATTTGTGTTGCTGCTATCCTTGGTTCCACACTAAACGGAGAGTTTGAGGATGTCAAACGCCTCAATGATCTTCTTATTGAAAAGAATAAGCAAACTGGGTGGGACACTCCTATTCATGTTGATGCAGCCAGTGGTGGATTCATTGCTCCATTTATCTACCCAGAGCTTGAGTGGGATTTCCGATTACCTCTAGTGAAGAGCATCAATGTTAGTGGACACAAGTATGGTTTGGTGTATGCTGGAATCGGTTGGGTTATCTGGAGGAGCAAGGAGGACCTGCCTGAAGAACTCATCTTCCATATCAACTATCTCGGAGCTGATCAACCCACCTTCACACTTAACTTCTCCAAAGGTTCCAGCCAAGTCATTGCTCAATACTACCAACTAATTCGCCTTGGTTTTGAGGGCTACAGAAACGTGATGGAAAATTGCAGAGACAACATGTTGGTGCTGAAAGAGGGACTCGAGAAGACAGGGCGGTTTGCCATTGTGTCCAAAGACAATGGTGTGCCTTTGGTTGCTTTCACCCTGAAAGACCACACTCACTTTGACGAGTTTCAAATCTCTGACCTGCTGAGACGTTTTGGATGGATTGTGCCAGCATACACCATGCCCCCAGATGCTCAACATGTTACAGTGCTTCGTGTTGTCATCAGGGAGGACTTTTCAAGAACTCTTGCAGAGCGTCTGGTGGCAGATGTGGAAAAGGTGTTGCATGAGCTTGATGGCCTTCCAGCAAGGGTGATCAGTAGCACCACTGTGGCAGTCAACACAGAAGAAAATGGCAAAGTGGTTAAGAAGAGTGCTCTAGAGACACAGAGGGAAATCACTGCGGTTTGGAAGAAGTTTGTGTTGGAGAGGAAGAAGCTCAATGACAAGATGAATGGTGTTTGCTAG 1506 0.4668 MVLSKTASESDVSVHSTFASRYVRTSLPRFRMPEESIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEESETAVGVGTVGSSEAIMLAGLAFKRRWQNRRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPDQAVELVDENTICVAAILGSTLNGEFEDVKRLNDLLIEKNKQTGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCRDNMLVLKEGLEKTGRFAIVSKDNGVPLVAFTLKDHTHFDEFQISDLLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLVADVEKVLHELDGLPARVISSTTVAVNTEENGKVVKKSALETQREITAVWKKFVLERKKLNDKMNGVC* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0516 501 Gene3D - 361 448 - -
Vra10g0516 501 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vra10g0516 501 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vra10g0516 501 Gene3D - 1 65 - -
Vra10g0516 501 PANTHER GLUTAMATE DECARBOXYLASE 1 501 - -
Vra10g0516 501 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Vra10g0516 501 CDD DOPA_deC_like 59 439 - -
Vra10g0516 501 Gene3D - 66 360 IPR015421 GO:0003824
Vra10g0516 501 PANTHER GLUTAMATE DECARBOXYLASE 1 501 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0516 Vra-Chr10 11071461 11077617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0516 1 501 Calmodulin-binding Proteins AT5G17330 84.190 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0516 K01580 - gmx:100796533 966.066