Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0512 ATGAATATGGCTCCTGTTTCACTACCTCCTGGGTTTAGGTTCCACCCCACAGATGAAGAACTTGTTTCTTATTATCTCAAAAGAAAGATAAATGGTCGTAAGATCGAGTTAGAGATAATCCCTGAAGTTGATCTTTACAAGTGTGAACCATGGGACTTGCCGGGAAAGTCATTGTTACCGGGAAAAGATTTGGAGTGGTATTTCTTCAGTCCTCGAGATAGGAAATATCCAAATGGATCAAGAACAAATCGTGCAACCAAATCTGGTTACTGGAAAGCCACAGGAAAAGACCGTAAGGTGAATTCTCAGAGTTGTGCAATAGGAATGAAGAAAACCCTAGTTTACTATCGAGGTAGGGCACCACATGGTTGTCGTACAGGTTGGGTTATGCATGAGTATCGTCTTGATGAGACACAGTGTGAAACCAACACAGGCTTGCAGGATGCATATGCTCTTTGTCGTGTGTTCAAGAAGACTGCAGTGATTCCTCCAAAAGTTGGAGATCAACACTATGTTAATGTCACCACCAGCCATGCAAATCAGATCATTGCCAGTGATCAATCATCAAGCATTAACGAGCTATACTCTGAAGGTAGAGGTGAAGTTTTAGAGAGCTCAAATTATTTTATGTCATTGGATGCATGCCCTTCCTCGAACATAAATGTGAATACCTACAATATCAATGGTGGAAGAAGGGACAATGAGACAACATGGTCGCATTTCTTATCAGAAGACTTGCTCAATCTTCCAACAACATCCACTTGTTCATTTCCCAATTATGGATCCATGAGCTATCCTCCATCAAAGGTGGATGTAGCACTGGAGTGTGCAAGGATGCAGCACAGGTTTAGCATGCCTCCATTGCAGATGCAGGATCTGGAGTTTCCTCAAGTTGGAATTTCGAAGCTGAAGATGGCACAAGGGTCGAGTTCCATGAGTGGAACCAGAAACGAAACAGATATCTTGCAGGAAATTCTTTCGGTTGCTCATGCTTCCCAGGAGTTAATAAATCAATCCAACTACTCATCACAGCCATTCATGAATGCCAATGAAAACTATGCTCCTCATGAAAGTGACTTCACTTTTATGGTTGGCACCAATTACAATCATGTCAACGATATGAACACCATGGGATTTGTTGACAAAGCATGGGAAGACCAAAACACAAGATCAATAGAGATCGGAGATCTTGATGATGGATTCAAGACAGAGAATTTGAAATGGGTGGGAATGTCCAGCAAAGATGTCGGAAAGAGCTTTATGGAAGAGCAGCAAAATATTGTTCCAATTGATGATATCTCAAACTTCCAAACTAACACGGAAGAAAACGAGATGAAAGTAGGATTTGAGAAACACAGTTGCAACAAAGAAATAACTGATACTGAGATTGATGATTTTTCAATGGGATTCATGAATGATGAAGACCCGAATGAGAACTTCCTAAACGAGGAAAACATTGACTATTCAAATCCTACAAACTTTGATGTCGTTGAGGAAACAAAAACCAATCATGGAATGTTTGTCTCGACTCATCAAGTAGCTGATACATTCTTTCATCAAGTAGCTCCTTCACAAACCCTAAAAGTTCAACTGAATCCAGTAATGGGTGGCAATGAGTGTATAGAGAATGCAAGAGTTAGCGAAGGACTGTCTTTCTTTAGAAAGTTTAAGGCCTGTGTGACAGGGAAGCTAAGAAAGGCATCAACAATAGGAAGTGCCATTGAATTCATCTTTGCATTGTTGTTGATGCATTGTGTTTTTGTAAAGGAATTTGTGGAAGATTGGAAATCAGAGCTTAAAAATGGTGGCAATGTTTACACGATGAAGAGAATGAGAGAAGCAGAAGAGAGTGTGAGGAGGAATGAAGAAGAAAAAGTTTGGTTGATTGGAATGAAATATGGGAAAGGTTTTAGCATGGTCCTAAAGAAGATAAGCATTTTTCTCACTATATCGTTGGCTCTGTTTACCATGTGGGCTAACCATATCATAGTTGACTCTTAG 2001 0.4018 MNMAPVSLPPGFRFHPTDEELVSYYLKRKINGRKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQSCAIGMKKTLVYYRGRAPHGCRTGWVMHEYRLDETQCETNTGLQDAYALCRVFKKTAVIPPKVGDQHYVNVTTSHANQIIASDQSSSINELYSEGRGEVLESSNYFMSLDACPSSNINVNTYNINGGRRDNETTWSHFLSEDLLNLPTTSTCSFPNYGSMSYPPSKVDVALECARMQHRFSMPPLQMQDLEFPQVGISKLKMAQGSSSMSGTRNETDILQEILSVAHASQELINQSNYSSQPFMNANENYAPHESDFTFMVGTNYNHVNDMNTMGFVDKAWEDQNTRSIEIGDLDDGFKTENLKWVGMSSKDVGKSFMEEQQNIVPIDDISNFQTNTEENEMKVGFEKHSCNKEITDTEIDDFSMGFMNDEDPNENFLNEENIDYSNPTNFDVVEETKTNHGMFVSTHQVADTFFHQVAPSQTLKVQLNPVMGGNECIENARVSEGLSFFRKFKACVTGKLRKASTIGSAIEFIFALLLMHCVFVKEFVEDWKSELKNGGNVYTMKRMREAEESVRRNEEEKVWLIGMKYGKGFSMVLKKISIFLTISLALFTMWANHIIVDS* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0512 666 Pfam No apical meristem (NAM) protein 9 135 IPR003441 GO:0003677|GO:0006355
Vra10g0512 666 Gene3D NAC domain 17 161 IPR036093 GO:0003677|GO:0006355
Vra10g0512 666 ProSiteProfiles NAC domain profile. 8 158 IPR003441 GO:0003677|GO:0006355
Vra10g0512 666 SUPERFAMILY NAC domain 4 158 IPR036093 GO:0003677|GO:0006355
Vra10g0512 666 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 3 340 - -
Vra10g0512 666 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 3 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0512 Vra-Chr10 11021329 11024908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0512 3 657 NAC Transcription Factor Family AT1G65910 43.149 1.02e-160 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra10g0512 NAM 2.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0512 - - gmx:100818019 1014.6