Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0510 ATGATTTGCATCACTTTGCTATCGCTAGTGGCAGCAGCAACCGCAACAACAACGAAACGCAAATCAATGTCAAAACTAACCGTTCTCTTGTTTCTTCTATTCTCATCCTTCAATTCTTCAACAGTCACCAGTTTATACTCTCCTTCACCTCCCGCCGCGCCATTTTCCCAATCTACCCCTGACCCCGACTCCTCTCCGCCGGCCGAGTGGCTCTTCGCCCACGCCACGCACTACGCCGCCACCGATGCTCTTGGCGGCGCGTGCGGCTACGGTGACCTTCCCAACGGCATGGCCACCGCTGCACTCAGCGAAGCCCTCTTCAACCGCGGCCAGATCTGCGGCGCCTGCTTCGAGCTCCGCTGCCACGAGGAGGACGCCGACTTCGACCGCCGCTGGTGCATCTCCGGCGCGTCGGTTGCCGTCACCGCCACCAATTTCTGCGCACCGAACTACGGATCCGACGCCGAGAGCCTCAGCGGACACTGTAACCCTCCGAAGCAGCATTTCGTTCTCCCCACCGAAGTTTTCGAGAAAATCGCAATCTGGAAAACTGGCACCGGCAACATGCCAGTGCAGTATCGCAGGATAGAGTGCAGAAGAGAAGGGGGAATGCGGTTCACAATAAGTGGTTCTGGAATCTTCATTTCGGTACTGATTAGTAACGTGGGTGGGATGGGAAACATTGTGGGTGTGAAGGTTAAGGGTTCAAAAACTGGTTGGCTTTCAATGGGTAGAAACTGGGGTCAGAACTGGCATGTTAATGCTTTACTGCAGAATCAACCTCTCTCTTTTGAGGTCACTGGTAGTGATGGAATCACTGTTACATCTTACAATGTTGCTCCCAAGGATTGGACTTTTGGACAATCTTTTCAAGGAAAACAATTTCCCCTTCAAAGGTAA 900 0.53 MICITLLSLVAAATATTTKRKSMSKLTVLLFLLFSSFNSSTVTSLYSPSPPAAPFSQSTPDPDSSPPAEWLFAHATHYAATDALGGACGYGDLPNGMATAALSEALFNRGQICGACFELRCHEEDADFDRRWCISGASVAVTATNFCAPNYGSDAESLSGHCNPPKQHFVLPTEVFEKIAIWKTGTGNMPVQYRRIECRREGGMRFTISGSGIFISVLISNVGGMGNIVGVKVKGSKTGWLSMGRNWGQNWHVNALLQNQPLSFEVTGSDGITVTSYNVAPKDWTFGQSFQGKQFPLQR* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0510 299 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 213 292 IPR007117 -
Vra10g0510 299 SMART dpbb_1 99 193 IPR007112 -
Vra10g0510 299 SUPERFAMILY PHL pollen allergen 200 291 IPR036749 -
Vra10g0510 299 PRINTS Expansin/Lol pI family signature 69 84 IPR007118 GO:0005576
Vra10g0510 299 PRINTS Expansin/Lol pI family signature 186 202 IPR007118 GO:0005576
Vra10g0510 299 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Vra10g0510 299 PRINTS Expansin/Lol pI family signature 278 292 IPR007118 GO:0005576
Vra10g0510 299 Pfam Expansin C-terminal domain 204 281 IPR007117 -
Vra10g0510 299 PANTHER EXPANSIN-A15 56 296 IPR002963 GO:0009664
Vra10g0510 299 PRINTS Expansin signature 94 108 IPR002963 GO:0009664
Vra10g0510 299 PRINTS Expansin signature 159 176 IPR002963 GO:0009664
Vra10g0510 299 PRINTS Expansin signature 202 214 IPR002963 GO:0009664
Vra10g0510 299 PRINTS Expansin signature 214 235 IPR002963 GO:0009664
Vra10g0510 299 PRINTS Expansin signature 249 270 IPR002963 GO:0009664
Vra10g0510 299 PRINTS Expansin signature 278 294 IPR002963 GO:0009664
Vra10g0510 299 SUPERFAMILY Barwin-like endoglucanases 69 221 IPR036908 -
Vra10g0510 299 PANTHER EXPANSIN-A13 56 296 - -
Vra10g0510 299 Gene3D - 204 295 IPR036749 -
Vra10g0510 299 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 85 203 IPR007112 -
Vra10g0510 299 Gene3D - 55 199 IPR036908 -
Vra10g0510 299 Pfam Lytic transglycolase 99 193 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0510 Vra-Chr10 10993483 10994778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0510 69 295 Expansin Gene Family AT3G03220 69.528 2.03e-114 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0510 - - gmx:100790211 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0510 10 10993483 10994778 Vra6g0766 6 7464604 7466846 PCT