Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0509 ATGGCGATTCGAGATCAGAATGGATTTAACAGATCACAGGATGATCCTTCAGTAGGAAGTGGTGTATCTTTGAGTTCTGGGGTGCATTCTGCTCCACATATTCAACTTAATGAGCAGTTTTCTTGTGGGAGTGACTACGCTCTGAAGGTAAGGAAACCATATACTATCACAAAACAGAGAGAGAGGTGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCTTTAAAGCTTCATGGTCGGGCTTGGCGGCGTATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGCGACCCTACTGGGAATGTTACAAATAGAGCGGAGTCAATTGAAATTCCTCCTCCAAGACCAAAACGAAAGCCAATGCATCCTTACCCTCGTAAACTAGTTGAGACTCCTAATAAAGAATCTTCTTCAATCCCAGAACAACTTATGAAGTCTGCTTCTCTGAAATCATCAGATTTTGATCAAGAAAACCAATCTCCGAAATCAGTATTATCAGGAGCTGGTTCAGACATCCTTAGCTCCTCAGATTCAGACACACCAAATGAAAGTTTGTCCCCCATGTCATCCATCAGCGACATCCATACAACATCCGAAGAAGCTGGAATAAACGCTGATTCTTCTCATGATGAGAAATCTCTCATGAAATTAAAGCTTCCTACAAAGGAAAGTGAAGAATGTTCCGGCCAGACTTTGAAACTCTTTGGGATTACAGTTTTTGTAACAGATACATGCAAACCCTCTTCTCCAACAACTGAAGCATGCAAACCAATACCTGTAAACATATGCAAGAGGGATGGAAGATTGGAACTTATTGGGCACATTTCACCCAGTGAAACATCAGGCATATCCCTACTAAAGGTGAGAGAGGGTCCTGAAACATGTGGTGGGAAAGGATTTGTGCCATATAGAAGGTGCATGGCAGGGAGAGAAAACCAGTCTTCATCTGTGACAAATGATACTAGAGAAGAGCAATGCATCCACCTTTCCTTGTAG 1038 0.42 MAIRDQNGFNRSQDDPSVGSGVSLSSGVHSAPHIQLNEQFSCGSDYALKVRKPYTITKQRERWTDEEHKKFLEALKLHGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDPTGNVTNRAESIEIPPPRPKRKPMHPYPRKLVETPNKESSSIPEQLMKSASLKSSDFDQENQSPKSVLSGAGSDILSSSDSDTPNESLSPMSSISDIHTTSEEAGINADSSHDEKSLMKLKLPTKESEECSGQTLKLFGITVFVTDTCKPSSPTTEACKPIPVNICKRDGRLELIGHISPSETSGISLLKVREGPETCGGKGFVPYRRCMAGRENQSSSVTNDTREEQCIHLSL* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0509 345 PANTHER PROTEIN REVEILLE 7-RELATED 24 270 - -
Vra10g0509 345 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Vra10g0509 345 PANTHER SWI/SNF COMPLEX-RELATED 24 270 - -
Vra10g0509 345 MobiDBLite consensus disorder prediction 145 204 - -
Vra10g0509 345 Gene3D - 62 108 - -
Vra10g0509 345 MobiDBLite consensus disorder prediction 1 28 - -
Vra10g0509 345 SMART sant 59 107 IPR001005 -
Vra10g0509 345 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
Vra10g0509 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Vra10g0509 345 MobiDBLite consensus disorder prediction 125 143 - -
Vra10g0509 345 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Vra10g0509 345 CDD SANT 62 105 IPR001005 -
Vra10g0509 345 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Vra10g0509 345 MobiDBLite consensus disorder prediction 109 204 - -
Vra10g0509 345 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0509 Vra-Chr10 10984491 10987594 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra10g0509 Myb_DNA-binding 5.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0509 - - gmx:780539 495.352