Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0508 ATGGGTTCTTGGGCTAGAGTATCTGTTTTGACTATTCCATGGTCTACAATCAATGCCGAATCTGCTACGGACTCCAAATTAGGCGCTGTGTTTTATAAAATGTACAGAAATACAAATAATAGAAAACTGTGTCTCTCTTTTGCTTGGGATAATTATAAACTTAGGAGTCTTGGTGTGATTAAATCAGGCCAAGATGTATCTTATTTTCAAACTGAACAAGAAGTAGGAACTTGGGAAGAACCAGATACTGGCAGTGACAGCGAGTCTGATGGTGAGGAAGTTGAAGACCACTTTCTATTTGAAAGTGACGGAATGAGGGATTCAGTTGTTGCTGATGTTAATATAACTTCAAGGGACAACTATGAAGAACTTATTAAGAAAGAGGTTGAACAGCTTTTGGAACCAGAAGAAAGAGCAATATTGCAACAGAATGTTACTCCTAACTTGGAAAAAATATCAACTGAAAAATGGAGCCCACTGCACACTCTTGTGCTATCAATGCAGATGAGTTGCGTGGATAAGCTTCTTGATAACGGCATGGACATTGATTTGCCCGATAAGGAAGGCCTTACTGCACTTCATAAGGCAATTATAGGTAGAAAAGATAGTTTGATTAGCCATCTTCTACGGAGACGAGCAAGTCCCCATGTTAAGGATAAGGATGGAGCCACTCCACTTCATTATGCAGTTCAAGTTGGTGCCAAGATGACTGTGAAATTATTGATCAAATACAAGGCTGATGTCAATGTTGAAGATAACGATGGTTGGACCCCCTTGCACGTTGCCATTCAGAGCAGAAATAGAGATATAGCAAAAATTTTGTTAGTCAATGGTGCTGATAAGACAAGGAAAAATAAGGACGGAAAAACAGCTCTGGATCTAAGCTTATGCTATGGGAAAGATTTTAAGTCTTATGAACTTGCCAAATTACTGAAGACGGTTCCAGCAGATAGCTGTCTATGA 963 0.3925 MGSWARVSVLTIPWSTINAESATDSKLGAVFYKMYRNTNNRKLCLSFAWDNYKLRSLGVIKSGQDVSYFQTEQEVGTWEEPDTGSDSESDGEEVEDHFLFESDGMRDSVVADVNITSRDNYEELIKKEVEQLLEPEERAILQQNVTPNLEKISTEKWSPLHTLVLSMQMSCVDKLLDNGMDIDLPDKEGLTALHKAIIGRKDSLISHLLRRRASPHVKDKDGATPLHYAVQVGAKMTVKLLIKYKADVNVEDNDGWTPLHVAIQSRNRDIAKILLVNGADKTRKNKDGKTALDLSLCYGKDFKSYELAKLLKTVPADSCL* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0508 320 MobiDBLite consensus disorder prediction 72 93 - -
Vra10g0508 320 Pfam Ankyrin repeats (3 copies) 204 285 IPR002110 GO:0005515
Vra10g0508 320 PANTHER ANKYRIN REPEAT AND SOCS BOX PROTEIN 3 79 313 - -
Vra10g0508 320 Gene3D - 222 304 IPR036770 -
Vra10g0508 320 ProSiteProfiles Ankyrin repeat profile. 188 220 IPR002110 GO:0005515
Vra10g0508 320 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 79 313 - -
Vra10g0508 320 SMART ANK_2a 254 283 IPR002110 GO:0005515
Vra10g0508 320 SMART ANK_2a 188 217 IPR002110 GO:0005515
Vra10g0508 320 SMART ANK_2a 221 250 IPR002110 GO:0005515
Vra10g0508 320 SMART ANK_2a 155 184 IPR002110 GO:0005515
Vra10g0508 320 SMART ANK_2a 287 320 IPR002110 GO:0005515
Vra10g0508 320 ProSiteProfiles Ankyrin repeat region circular profile. 221 253 - -
Vra10g0508 320 MobiDBLite consensus disorder prediction 79 93 - -
Vra10g0508 320 ProSiteProfiles Ankyrin repeat profile. 155 187 IPR002110 GO:0005515
Vra10g0508 320 Pfam Ankyrin repeats (many copies) 157 198 IPR002110 GO:0005515
Vra10g0508 320 SUPERFAMILY Ankyrin repeat 147 311 IPR036770 -
Vra10g0508 320 Gene3D - 119 221 IPR036770 -
Vra10g0508 320 ProSiteProfiles Ankyrin repeat region circular profile. 254 280 - -
Vra10g0508 320 ProSiteProfiles Ankyrin repeat profile. 221 253 IPR002110 GO:0005515
Vra10g0508 320 ProSiteProfiles Ankyrin repeat profile. 254 286 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0508 140 280 Ion Channels AT2G25600 31.206 4.26e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0508 - - gmx:100808064 518.079