Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0493 ATGATGTTTGAAGTAAAGTTAATTATCTTAACTATGATGTTGTGGATTGCAGAACATGGTGCAAAGGGTGATCCACAGACATATCTGGTAAACACTGGATGCAGCACATACAACGCTAGCAACGTGGAGAGTTTCTATGCGAATATCAACGCAACATTTTCAAACCTCAGAAGAGAAATTAGCAATAACAGCAAGCACTTTGGCACAACACAGCAAGCCATAGGAGATGTTCTCACCTATGCTATGTTTCAATGCAGAAACTATCTCTCCAAAAATGACTGTCTTTCTTGCTTCAACACCGCCTCAACCCAAATCCGCAACTGCTCCCAAGCCAACGGCGCCAGAGTCATCTACGACGGTTGCTTCCTCAGGTATGAGAGCCAGATGTTCTTCGACCAGACCAATGAACTTGGCAAGGGTGTATTATGTGGGAAGAACACTTCAAATGCCACTGGTTTTGGATTAGTCGGACGACAAGTTATCGCAGATATTCAAACAGCAACACCCAAAACTAGAGATTTTTATGCAGCAACTAAGACACAGGTGGCTAATGGAACTGCAATTTATGCTGTTGCACAGTGTGTTGAAACTGCAACCGAGGATAAATGTCTGAGTTGCATGCAAGCTGGATACAACAACTTACAAAGTTGTCTTCCCAACACAGAGGGTAGAGCTTATGATGCTGGCTGTTTCATGAGATACTCCACCACACCATTCTTTGCTGATAACCAAACCATTGATATTGCACCCTATTTGAAAAAAGGAGATTCAAGCAGGAAGTGGATAATAATTGCTGCCAGTGTTGGAGCTGTTGTTGCTCTCCTCTGTGTGTTGTTTGCATGGCGATGGTTTATAAAACCAAAGAGGGCTCCTAGAGGTGATATATTGGGAGCAACTGAGTTGAAAGGTCCAGTAAACTACAAGTATAATGACTTGAAAGCTGCAACGAAAAAATTCAGTGCTGAAAACAAACTTGGAGAAGGAGGTTTTGGTGATGTATACAAGGGTACTCTGAAGAATGGAAAAGTTGTTGCCGTAAAAAAACTAGTGTTGGGGAAATCAAGCAAGATGGAGGATGATTTTGAAGGTGAAGTGAAGCTTATAAGTAATGTTCATCATCGGAATCTTGTTAGACTTCTTGGCTGCTGCAGCAAAGGCCAAGAGAGAATCTTGGTTTATGAGTATATGGCAAATAGCAGTCTTGACAAATTCTTATTCGGTAACAGAAAAGGTTCCCTCAGTTGGAAACAACGTTATGATATAATTTTAGGCACANCAAGGGGNCTGGCATATCTGCATGAGGAATTCCACGTGTCCATCATACATAGAGATATTAAAACTTCTAATATCCTCTTGGATGATGATCTTCAACCCAAAATTGCTGATTTTGGATTGGCAAGGCTTCTGCCAGAGGATCGTTCCCATCTTAGCACAAGATTTGNTGGAACATTGGGATACACAGCACCTGAGTATGCAATCCATGGTCAATTATCAGAGAAGGCTGACACCTACAGCTATGGAATTGTCGTCCTAGAAATCGTTAGTGGTCAAAAGAGTACCGATGTGAAGGATGACGAGGATGGTCGTGAATACCTACTCCAACGAACATGGAAACTGTATGAGAGAGGAATGCACCTAGAGCTGGTGGACAAGGCCATAGACCCTAATGATTATGATGCAGAAGATGTCAAGAAAATCATAGAAATTGCATTGTTATGCACTCAGGCATCGGCTGCAACGAGACCAACAATGTCTGAAGTAGTAGTGCTACTCAAAAGCAAGAGCTTAGTGGAGAACCTGCGACCAACTATGCCTGTGTTTGTTGAAACGAATATGAAGATTCGGGAAAGCAAGTCTAGCTCAACCAGCGGCTCTTCATCTAATGCCACTGCCTCCATTTCTGTTCTATCAGCACGATGA 1920 0.4229 MMFEVKLIILTMMLWIAEHGAKGDPQTYLVNTGCSTYNASNVESFYANINATFSNLRREISNNSKHFGTTQQAIGDVLTYAMFQCRNYLSKNDCLSCFNTASTQIRNCSQANGARVIYDGCFLRYESQMFFDQTNELGKGVLCGKNTSNATGFGLVGRQVIADIQTATPKTRDFYAATKTQVANGTAIYAVAQCVETATEDKCLSCMQAGYNNLQSCLPNTEGRAYDAGCFMRYSTTPFFADNQTIDIAPYLKKGDSSRKWIIIAASVGAVVALLCVLFAWRWFIKPKRAPRGDILGATELKGPVNYKYNDLKAATKKFSAENKLGEGGFGDVYKGTLKNGKVVAVKKLVLGKSSKMEDDFEGEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDKFLFGNRKGSLSWKQRYDIILGTXRGLAYLHEEFHVSIIHRDIKTSNILLDDDLQPKIADFGLARLLPEDRSHLSTRFXGTLGYTAPEYAIHGQLSEKADTYSYGIVVLEIVSGQKSTDVKDDEDGREYLLQRTWKLYERGMHLELVDKAIDPNDYDAEDVKKIIEIALLCTQASAATRPTMSEVVVLLKSKSLVENLRPTMPVFVETNMKIRESKSSSTSGSSSNATASISVLSAR* 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0493 639 CDD STKc_IRAK 325 592 - -
Vra10g0493 639 ProSitePatterns Protein kinases ATP-binding region signature. 325 348 IPR017441 GO:0005524
Vra10g0493 639 Pfam Salt stress response/antifungal 34 127 IPR002902 -
Vra10g0493 639 Pfam Salt stress response/antifungal 148 236 IPR002902 -
Vra10g0493 639 Gene3D - 26 130 IPR038408 -
Vra10g0493 639 Gene3D - 140 239 IPR038408 -
Vra10g0493 639 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 17 636 - -
Vra10g0493 639 Gene3D Phosphorylase Kinase; domain 1 295 395 - -
Vra10g0493 639 Pfam Protein kinase domain 320 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0493 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Vra10g0493 639 ProSiteProfiles Gnk2-homologous domain profile. 27 130 IPR002902 -
Vra10g0493 639 ProSiteProfiles Protein kinase domain profile. 319 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0493 639 Gene3D Transferase(Phosphotransferase) domain 1 396 625 - -
Vra10g0493 639 ProSiteProfiles Gnk2-homologous domain profile. 135 239 IPR002902 -
Vra10g0493 639 SMART serkin_6 319 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0493 639 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 17 636 - -
Vra10g0493 639 SUPERFAMILY Protein kinase-like (PK-like) 302 591 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0493 Vra-Chr10 10763041 10768229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0493 2 639 Receptor kinase-like Gene Family AT1G70520 37.156 1.15e-132 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra10g0493 Pkinase 2.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0493 - - gmx:100801131 970.304