Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0492 ATGCTGCAACTTAAGGTTGTGGCCTTGATTTTGATATGGTGGAGCAGTAATTCTGTTGAAGATGCAGTTGCAGCCCCAGATGCACATTTAGTAAACATAGGGTGCAGCTCGTTCAATGCTTCCGATTTGCGTAGCTTCTTTGCAAATATCAATGAATCCTTTTCAGACATGAGAGAAGAGATTACGAATCAAAGCAAGCACTTTGGCACAGTACAGAAAGCAAGAGGACAAGTGCTCACATACGCTATGTTTCAGTGCAGAAACTACCTTTCCAAAAATGACTGTCTTTCTTGCTTCAACACTGCCACCACCCAGATCCGCAACTGCTCCAACGGCAACGGTGCCAGAGTCATCTACGACGGCTGTTTCCTCAGATATGAGAGTAACAGGTTCTACGATCAGACCAACGAAATTGGCAGTGGGGTATCATGTGGGAACATAAGTTCAACTGTCACTGATTTTAAAGCAGCTGGACAACAAGCCCTAATGGACCTCCAAACAGCAGTACCCAAAACTAGAGATTTTTATGCAGCTACGAAGACACTGGTGGCTGGTGGTAGTGCAGTTTATGCTGTTGCACAGTGTGTTGAAACTGCCACTGAGATTAATTGTCAGAATTGCATGCAAGTTGGATACAACAACTTACAAAGTTGTCTTCCCAACACAGAGGGTAGAGCCTATGATGCTGGCTGTTTCATGAGATACTCCACCACACCTTTCTTTGCTGATAATCAGACTACTAATATTGCACCCTATTTGAAAAAAGGAAATTCAAGAAAGAAATGGGAAATAATAGGTGGTGCTACTGGAGGTGTTGTTCTTCTTCTTTTGTTGTTTGGCTGGAGAATGTCAAGAAAAAGAAACCAGATTCCCAGAGGTGATATATTGGGAGCGACTGAGTTGAAAGGTCCAGTTAAATACAAGTATAATGATTTGAAAGCAGCAACGAAAAATTTCAGTGCTGAAAACAAACTTGGAGAAGGAGGTTTTGGTGATGTATACAAGCAGGGTACTCTGAAAAATGGAAAAGTTGTTGCTGTAAAAAAGCTAGTTTTGGGGAAATCAAGCAACATGGAGGATAATTTTGAAGGGGAAGTGAAGCTTATAAGCAATGTTCATCACAGAAATCTCGTTAGGCTTCTTGGTTACTGCAGCAAAAGCCAAGAAAGAATCTTAGTTTATGAATACATGGCAAATAAAAGTCTTGATAAATTCTTATTCGGTAACAAAAAGGGTTCCCTCAATTGGAAACAACGCTATGATATAATATTAGGCACAGCAAGAGGACTGGCATATCTGCATGAAGAGTTCCACGTCTCCATCATACATAGAGATATCAAGACTGCTAACATCCTTCTAGATGATGTTTTTCAGCCCAAAATTGCTGATTTTGGGTTGGCAAGGCTTCTCCCAGATGATCGTTCTCATCTTAGCACAAAATTTGCAGGAACTTTAGGCTACACAGCACCTGAGTATGCAATGCATGGTCAATTATCAGAGAAGGCTGATACCTACAGCTATGGTATTGTAGTGCTAGAAATAGTAAGTGGCCAAAAGAGTACAGATATGAAGAATGATGAGGATGGTGAATACCTTCTTCGACGAGCATGGAAACAGCATGAGAGAGGCATGTACTTGGACCTGGTAGACAAGGCAATAGACCCTAATGAATATGACGTAGAAGAAGTGAAAAAAATCATAGAAATTGCTTTGTTATGCACTCAGGCTTCTGCTTCAACGAGGCCAACAATGACGGAAGTGGTAATGCTACTGAAAAGCAAGAGCTTATTGGAGCACCTGCGACCAACTATGCCTGTGTTTGTTGAAACAAATATGATCCCTCGGGAAGGCAACTCTACCAGTTCATCTAATGCTACTGCCTCCATTTCTGTTCTCTCAGCTCGATGA 1908 0.4151 MLQLKVVALILIWWSSNSVEDAVAAPDAHLVNIGCSSFNASDLRSFFANINESFSDMREEITNQSKHFGTVQKARGQVLTYAMFQCRNYLSKNDCLSCFNTATTQIRNCSNGNGARVIYDGCFLRYESNRFYDQTNEIGSGVSCGNISSTVTDFKAAGQQALMDLQTAVPKTRDFYAATKTLVAGGSAVYAVAQCVETATEINCQNCMQVGYNNLQSCLPNTEGRAYDAGCFMRYSTTPFFADNQTTNIAPYLKKGNSRKKWEIIGGATGGVVLLLLLFGWRMSRKRNQIPRGDILGATELKGPVKYKYNDLKAATKNFSAENKLGEGGFGDVYKQGTLKNGKVVAVKKLVLGKSSNMEDNFEGEVKLISNVHHRNLVRLLGYCSKSQERILVYEYMANKSLDKFLFGNKKGSLNWKQRYDIILGTARGLAYLHEEFHVSIIHRDIKTANILLDDVFQPKIADFGLARLLPDDRSHLSTKFAGTLGYTAPEYAMHGQLSEKADTYSYGIVVLEIVSGQKSTDMKNDEDGEYLLRRAWKQHERGMYLDLVDKAIDPNEYDVEEVKKIIEIALLCTQASASTRPTMTEVVMLLKSKSLLEHLRPTMPVFVETNMIPREGNSTSSSNATASISVLSAR* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0492 635 SMART serkin_6 319 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0492 635 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Vra10g0492 635 CDD STKc_IRAK 325 592 - -
Vra10g0492 635 SUPERFAMILY Protein kinase-like (PK-like) 304 611 IPR011009 -
Vra10g0492 635 Pfam Protein kinase domain 320 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0492 635 Pfam Salt stress response/antifungal 149 237 IPR002902 -
Vra10g0492 635 Pfam Salt stress response/antifungal 39 128 IPR002902 -
Vra10g0492 635 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 13 627 - -
Vra10g0492 635 Gene3D Phosphorylase Kinase; domain 1 285 396 - -
Vra10g0492 635 Gene3D Transferase(Phosphotransferase) domain 1 397 601 - -
Vra10g0492 635 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 13 627 - -
Vra10g0492 635 ProSiteProfiles Gnk2-homologous domain profile. 135 240 IPR002902 -
Vra10g0492 635 ProSiteProfiles Protein kinase domain profile. 319 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0492 635 MobiDBLite consensus disorder prediction 614 635 - -
Vra10g0492 635 ProSiteProfiles Gnk2-homologous domain profile. 28 131 IPR002902 -
Vra10g0492 635 Gene3D - 27 131 IPR038408 -
Vra10g0492 635 Gene3D - 138 240 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0492 Vra-Chr10 10755958 10759506 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0492 1 633 Receptor kinase-like Gene Family AT1G70520 35.474 2.18e-124 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra10g0492 Pkinase 2.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0492 - - gmx:100801131 975.311