Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0491 ATGAAGAAAATGTTAGGACTACTGAAGCTATTGGCCTTAGCTTTGATATGGTGGAGCAGTAGTGTTGAACATGCAGATGCAGCAACACTGAAAACACGTCTAATAAACACAGGGTGCAGCCCATTCAACGCTTCCAACGCGCGCAGCTTCTTAGCAAATGTCAATGATTCATTTTCAGAGATGAGAGCAGAAATTAGCAACCAAAGCAAACTCTTTGGCACATCACAGAAATCAAGGTCAGGGACCCTCACATATACAATGTTTCAATGCAGAAACTATCTCTCCAAAAATGATTGTATGTCTTGCTTCGACACTGCCTCCACCCAAATCCGCAACTGCTCCAAAGCCAATGGCGCCAGAGTTATCTACAACGATTGCTTCCTCAGGTACGAGAGCGAGAGGTTCTACCAACAGACCAATGAACTTGGCAGTGGGGTAACGTGTGGGAACACCAGTTTAAAAACCACTCGTGATTTTAAAGTAATTGGACAACAAGCACTCACGGAGATTCAAACAGCAACACCTAAAACTAAAGGGTTTTATGCAGCTACCAAGACACGGGTGGATGATGGTTCTTCAATTTATGCCATTGCACAGTGCGTTGAAACTGCCGCAGAAAGTGATTGTTTGAAATGCATGCAAGTTGCATACAACAACTTACAGAGTTGCCTTCCCAACACAGATGGTACAGCATATGATGCAGGCTGTTTTATGAGATACTCCACCACACCTTTCTTTGCTGCTAATCAAACCATTGATATTCGATCCTACTTAAAACAAGGAAGTTCAGGAAAGAAGTGGGGAATTATAGGTGGTGTTGTAGGAGGTTTTGTTCTCCTCCTAATTCTGTTGTTTGTCTGGAGGATGTCTAGAAAAAGAAACAAGATTCACAGAGGTGACATATTGGGAGCAACTGAGTTAAGAGGACCAGTTAACTACAAATATAATGATTTGAAAGCTGCAACTAAAAATTTCAGTGCTGAAAATAAACTTGGAGAAGGAGGTTTTGGTGCTGTATACAAGGGTACTCTTAAAAATGGAAAAATTGTTGCCATAAAGAAATTAGTGTTGGGAAAATCAAGCAAGATGGAGGATGATTTTGAAGGTGAAGTGAAACTTATAAGCAATGTTCATCATCGGAATCTCGTTAGACTTCTTGGTTGCTGCAGTAAAGGGGAAGAAAGAATTCTGGTATACGAGTACATGGCAAATAGTAGCCTTGACAGATTCTTATTTGGTGCTAAAGGTTCCCTCAATTGGCAACAACGTTATGATATAATTTTGGGCACAGAAAGAGGACTAGCATATTTACATGAAGAGTTCCATGTGTCCATCATTCATAGAGATATAAAGACAGGCAATATCTTGCTAGATGATGATCTTCAACCCAAAATTGCTGATTTTGGTTTGGCAAGGCTTCTGCCAGGGGATCGTTCTCATCTCAGCACAAAATTTGCAGGAACATTGGGATACACAGCACCGGAGTATGCAATGCACGGTCAATTATCAGAGAAGGCTGATACCTACAGCTATGGTATTGTAGTTCTAGAAATTATAAGTGGTCAAAAGAGTACTGATGTGAAGAATGAGGAGGAATGTCGTGAATACCTTCTTCAACGAGCTTGGAAACTGTATGAGAGAGGCCTGCAGCTTGAGCTTGTGGACGAGGCCATAGACCCTAATGAGTATGATGCAGAAGAAGTAAAGAAAATCATAGAAATTGCGTTGTTGTGCACTCAGGCATCTGCAGCAAGTAGGCCAACAATGTCTGAAGTAGTAGTGCTACTCAAAAGCAAGAGCTTAATGGAGCACATGCGACCAACTATGCCTGTGTTTGTTGACACCAATATGATAAATAGGGAAGGAAACTCTGCTAGTTCATCTAATGCCACTGTCTCCGTTTCTGTTCTATCAGCTCGATGA 1923 0.4139 MKKMLGLLKLLALALIWWSSSVEHADAATLKTRLINTGCSPFNASNARSFLANVNDSFSEMRAEISNQSKLFGTSQKSRSGTLTYTMFQCRNYLSKNDCMSCFDTASTQIRNCSKANGARVIYNDCFLRYESERFYQQTNELGSGVTCGNTSLKTTRDFKVIGQQALTEIQTATPKTKGFYAATKTRVDDGSSIYAIAQCVETAAESDCLKCMQVAYNNLQSCLPNTDGTAYDAGCFMRYSTTPFFAANQTIDIRSYLKQGSSGKKWGIIGGVVGGFVLLLILLFVWRMSRKRNKIHRGDILGATELRGPVNYKYNDLKAATKNFSAENKLGEGGFGAVYKGTLKNGKIVAIKKLVLGKSSKMEDDFEGEVKLISNVHHRNLVRLLGCCSKGEERILVYEYMANSSLDRFLFGAKGSLNWQQRYDIILGTERGLAYLHEEFHVSIIHRDIKTGNILLDDDLQPKIADFGLARLLPGDRSHLSTKFAGTLGYTAPEYAMHGQLSEKADTYSYGIVVLEIISGQKSTDVKNEEECREYLLQRAWKLYERGLQLELVDEAIDPNEYDAEEVKKIIEIALLCTQASAASRPTMSEVVVLLKSKSLMEHMRPTMPVFVDTNMINREGNSASSSNATVSVSVLSAR* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0491 640 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 15 633 - -
Vra10g0491 640 SMART serkin_6 325 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0491 640 ProSiteProfiles Gnk2-homologous domain profile. 32 135 IPR002902 -
Vra10g0491 640 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 15 633 - -
Vra10g0491 640 Gene3D Phosphorylase Kinase; domain 1 289 401 - -
Vra10g0491 640 Pfam Protein kinase domain 326 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0491 640 ProSiteProfiles Gnk2-homologous domain profile. 141 245 IPR002902 -
Vra10g0491 640 CDD STKc_IRAK 331 597 - -
Vra10g0491 640 Gene3D - 145 245 IPR038408 -
Vra10g0491 640 Gene3D - 31 135 IPR038408 -
Vra10g0491 640 Pfam Salt stress response/antifungal 154 242 IPR002902 -
Vra10g0491 640 Pfam Salt stress response/antifungal 43 132 IPR002902 -
Vra10g0491 640 ProSiteProfiles Protein kinase domain profile. 325 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0491 640 ProSitePatterns Protein kinases ATP-binding region signature. 331 354 IPR017441 GO:0005524
Vra10g0491 640 SUPERFAMILY Protein kinase-like (PK-like) 313 622 IPR011009 -
Vra10g0491 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Vra10g0491 640 Gene3D Transferase(Phosphotransferase) domain 1 402 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0491 Vra-Chr10 10747390 10750859 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0491 2 640 Receptor kinase-like Gene Family AT1G70520 35.921 1.62e-125 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra10g0491 Pkinase 4.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0491 - - gmx:112997608 979.163