Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0490 ATGGCGGAAGTGAAGCTTGTAGGATTGAGCTTGTTGTGGTTGTGGTCATGGTGGAGCTTAGAGGGCGTAGAAGGAGACCCTCAACTCTTTCTACTAAAATGGGATTGCAGCGGATTCATTGCACCCAACTTATCCAACTTCAACAAAAACCTTGATGCAACTTTTGCAGATCTGCGAGATCAGGTCAGCAACCAAAGGAACCACTTTGCCACTGCACAAGCAACCACCGGATCAGATCCTGTCTATGCTATGTTTCAGTGCAGAAACTACCTCTCCGACACCGACTGCGCCACCTGCTTCACTGCCGCCGTCACCCAAATTCGCAACTGCTCCGCCGGAGTCAACGGTGCCCGTGTCGTTTATGACGGTTGCTTCCTCAGGTACGAGAGCAACGACTTCTTCGACCAGATCTTTTCTCGCAGCAGCATACTGTGTGGAAATCAGACTGCAGATGGAAGCACTGATTTTGGCGCAGTTGGAGCACAAGTGCTGATAGATCTACGAATAGGAACACCCAAAATCAGAGGCTACTTTGCAGCTACCAAAACAAAAGTGGCTGGTGGTGCAATCTATGCCTTTGCACAATGTGCAGAAACTCTCTCACAAGACACTTGTTTGGATTGTTTGTCAATTGAAGAGAGCAGTGTACGAGGTTGTCTTCCCAGTACTGAAGGTAGAGCATTCGACCCCGGCTGCTTTATGAGATACTCAGAGACACCCTTCTTTGCTGATAACCAAACCATTGACATCACTCCCTTCTTAAAACAAGGAGGAAGAGGTCCAAGCAAGAAGTGGATTCTTCTTGGTGGTTGTGTTGGAGGTGCACTTCTTGTTGTGATCCTTATTTCATTATTTCCCTGGCATAAGAGATCGCAGAGTCCCAAGAGAGTTCCCACAAGTAACGTATTGGGAGCATCTGAGTTGAAAGGTGCAACCAAGTTCAAGTATAGTGAATTGAAAGCTGCAACAAGAAATTTTAGTGAGAAAAACATACTAGGAGAAGGAGGCTTTGGCGCTGTATACAAGGGGACAATGAAGAATGGAAAAGTTGTTGCTGTAAAAAAATTATTTTCAGGAAATTCCAGCGAGATAGATGAAAATTTTGAAAGTGAAGTAACGCTTGTAAGTAATGTTCATCACAGAAATCTGGTTCGGCTTCTAGGTTGCTGCAGTAAAGGCCGAGAAAAAATCCTTGTTTATGAATACATGGCAAACAACAGTCTTGACAAATTCTTGTTTGGTAACAGAAAAGGTTCACTCAACTGGAAACAACGCTATGAAATAATTTTGGGCACAGCAAGGGGATTGGCCTATCTACATGAGGAATTTTATGTGTCTATCATACATAGAGATATTAAGAGTGGCAATGTCCTCTTGGATGAACAGCTTCAACCCAAAATTTCTGATTTTGGTTTGGTGAAGCTCCTACCAGGGGACCAATCCCATCTCAGAACAAAAGTTGCAGGAACATTGGGATACACAGCACCCGAGTATGTACTCCATGGTCAGTTATCAAAAAAGGCTGATACATACAGCTATGGAATTGTAGTACTTGAAATCATAAGTGGTCAGAGGTGTACTGATGTGAAGAGTGTTGATGGTAGCCATGAATACCTTCTTCGACGAGCATGGGACTTGTATGAGAAAGGCATGGAGTTGGAGTTGGTGGACAAAAGCTTAGGCCCTAATAGCTATGACATAGAAGAAGTGAAAAAAGTTATAGGCATTGCTTTGTTGTGCACTCAACCATCGGCTGGTATGAGACCAGCTATATCTGAAGTAGTGGTGCTGCTCAGCAGTAATGACTTTCTTGAGCGTATGAGACCTTCAATGCCTATCTTTATTGAATCGAATGGAAGAGCCTCAAGAGATATCTCTGCCTCGACTGCTTCCTCTGTGTCTAATGCCAGTGCTTCCCATTCTATAGTACCAGCTAGATGA 1941 0.4405 MAEVKLVGLSLLWLWSWWSLEGVEGDPQLFLLKWDCSGFIAPNLSNFNKNLDATFADLRDQVSNQRNHFATAQATTGSDPVYAMFQCRNYLSDTDCATCFTAAVTQIRNCSAGVNGARVVYDGCFLRYESNDFFDQIFSRSSILCGNQTADGSTDFGAVGAQVLIDLRIGTPKIRGYFAATKTKVAGGAIYAFAQCAETLSQDTCLDCLSIEESSVRGCLPSTEGRAFDPGCFMRYSETPFFADNQTIDITPFLKQGGRGPSKKWILLGGCVGGALLVVILISLFPWHKRSQSPKRVPTSNVLGASELKGATKFKYSELKAATRNFSEKNILGEGGFGAVYKGTMKNGKVVAVKKLFSGNSSEIDENFESEVTLVSNVHHRNLVRLLGCCSKGREKILVYEYMANNSLDKFLFGNRKGSLNWKQRYEIILGTARGLAYLHEEFYVSIIHRDIKSGNVLLDEQLQPKISDFGLVKLLPGDQSHLRTKVAGTLGYTAPEYVLHGQLSKKADTYSYGIVVLEIISGQRCTDVKSVDGSHEYLLRRAWDLYEKGMELELVDKSLGPNSYDIEEVKKVIGIALLCTQPSAGMRPAISEVVVLLSSNDFLERMRPSMPIFIESNGRASRDISASTASSVSNASASHSIVPAR* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0490 646 ProSiteProfiles Gnk2-homologous domain profile. 138 241 IPR002902 -
Vra10g0490 646 Pfam Salt stress response/antifungal 42 130 IPR002902 -
Vra10g0490 646 Pfam Salt stress response/antifungal 154 238 IPR002902 -
Vra10g0490 646 ProSiteProfiles Protein kinase domain profile. 326 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0490 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
Vra10g0490 646 SMART serkin_6 326 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0490 646 CDD STKc_IRAK 332 595 - -
Vra10g0490 646 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 22 643 - -
Vra10g0490 646 Gene3D Phosphorylase Kinase; domain 1 289 402 - -
Vra10g0490 646 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 22 643 - -
Vra10g0490 646 Gene3D - 31 133 IPR038408 -
Vra10g0490 646 Gene3D - 139 241 IPR038408 -
Vra10g0490 646 ProSitePatterns Protein kinases ATP-binding region signature. 332 355 IPR017441 GO:0005524
Vra10g0490 646 ProSiteProfiles Gnk2-homologous domain profile. 29 133 IPR002902 -
Vra10g0490 646 Pfam Protein kinase domain 327 534 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0490 646 SUPERFAMILY Protein kinase-like (PK-like) 308 598 IPR011009 -
Vra10g0490 646 Gene3D Transferase(Phosphotransferase) domain 1 403 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0490 Vra-Chr10 10738683 10741778 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0490 9 641 Receptor kinase-like Gene Family AT1G70520 38.022 2.27e-126 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra10g0490 Pkinase 9.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0490 - - gmx:100776342 958.362