Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0488 ATGCATCTCAGTTCTCTCCTACCCTTAACTGTGTTGTCGATCTTATTATGGAGCCTAGAGGGTGCCCTAGGAGACCCTCAGATTCTTCTCCTCAACAAGGGTTGTAGCCAATACAACGCCACGGATTTGTCCACTTTCAACCAGAATCTGAACGCAACTTTGAATGATCTCAGAGTTCAAGTTACCAACCAAAGCAAGTACTTTGCCACGGCTCAAGAAGCTAGAGGACAAGACCCTGTCTATGCCATGTTCCAATGTAGAAACTACCTCTCTACCACTGACTGCGCCGCCTGCTTCTCCGCCGCCGCCGCCCAAATCCGCAACTGCTCCGCCGGGGCCAACGGTGCCCGTGTCATCTATGACGGTTGCTTCCTCAGGTATGAGAGCGCTGGGTTCTTTGACCAGACAACTTTGGCTGGGAACAGTATGATATGTGGAAATCAGACAGCGGTTGTAGCCAGTGATTTTAATACAAGTGCACAGCAAGTGTTGAAGGATCTGCAAATTGCAACTCCCAAAATCAGTGGTTTCTTTGCAGCTACCAAGACACAAGTGTCTGGTGCTGCAATCTATGCCATTGCACAGTGTGCTGAAACTGTCTCAGAGAGTGGTTGTCTGGATTGCCTCACAGTTGGATACAACAACATTGAAGTTTGTTTACCCAATACAGAAGGCAGAGCATTTGATGCTGGATGTTTTATGAGATACTCAGAGACAGCCTTTTTTGCTGATAACCAGACAATTGATATCACACCCTTCTTGCAACAAGGGAGTTCAAGCAAAAAGGGAGCCATTATTGGTGGGGTTGTTGGAGGTGTAGCTTTGATTGTGATCATCCTTGCATTAATTGCCTTGCTAAGATGGTACAAGAAACCCAAGAAGGTTCGAAGAGGTGACATATTGGGAGCAACTGACTTGAAAGGTCCAGTGTCCTACAGGTATAAGGATTTGAAGGCTGCAACAAAAAATTTCAGTGATGAAAATAAACTGGGAGAAGGAGGTTTTGGAGATGTATACAAGGGCACTTTGAAAAATGGGAAGATAGTTGCAGTGAAGAAATTATTTTTTGGCGCATCAGGGAAGATCGATGATCAATTTGAAAGTGAAGTGAAGCTTATAAGCAATGTTCATCACAGGAATCTGGTTCGACTCCTTGGATGTTGCAGCAAAGGCCAAGAAAGAATCCTTGTTTATGAATACATGGCAAACAAAAGCTTGGATAGATTCTTATTCGGTGAAGTAAAGGATTCCCTCAACTGGAAACAAAGATATGATATAATTTTAGGCACAGCAAAGGGTTTGGCCTATCTGCATGAGGATTTCCACGTTTGCATCATACATAGGGATATAAAGACTAGTAATATCCTCTTGGATGATGAAATGCAACCAAGAATTGCTGATTTTGGGTTGGCAAGACTTCTACCAGAGGACCAATCTCATCTTAGTACAAGATTTGCAGGAACATTAGGATACACAGCACCTGAGTATGCAATCCATGGTCAGTTATCAGAGAAGGCTGATGCCTACAGCTTTGGTGTTGTACTCCTAGAAATCGTAAGTGGCCAAAAGAATAGTGAACTGAGGACAGATGCTAATGATGGTGAATTCCTCCTTAAAAGGGCATGGAAACTGTACGAGGAAGACAGGCATTTGGAGTTGGTTGACAAGAAATTGGATGGTAAAGAGTATGACGTAGAAGAAGTGAAGAAAGTGATAGAGATTGCTTTGCTTTGCATTCAAGCATCAGCTGGTGCAAGGCCAACAATGTCTGAAGTAGTAGCCTCACTGAAAGGCAAGAATTCACTGGGGCAAATTAGGCCATCTATGCCTCTACTGGTCTTAATAACCTTGATATGGTGGAGCTCGGATAATATTCATGCATATGGTGCAGTTGAAAATATACAGACAAATCTACTAAGCAAGGGGTGCAGCGCATACAACGCATCCAACTTGCGTAGCTTCTTTGCCAATATCAATGAAACTTTTGCAGGCCTTAGAGCACAAATTAGCAGTGATAAGAACAAGCACTTTGCCATAGAAGACAAAGCCAGGGGAGAGGTGATCACCTATGCTATGTTTCAATGCAGAAACTATCTCTCCAAAACTGAATGTCTTTCTTGCTTCGACACTGCCACCTCCCAGATCCTTAACTGCTCTGCTGCTAATGGCGCCAGAATCATATACGACTCCTGCTTCCTCAGGTATGAGAGCGAGAGGTTCTACGATGAAACCAATGAACCTGGCGGTGGAGTATCATGTGGGAACATGAGTTCAACTGTCACTGGTTTTAAAGTAGCTGCACAACCAGTGTTAATGGAGCTCCAGCAAGCAACACCCAAAATTAAAGGTTTTTATGCAGCTACTAAGACACCGGTTGTTGGTGGTAGTGCAATTTATGCCGTTTCACAGTGTGTTGAAACGGCCATGAAGACTAGTTGTCTGAACTGCCTACAAGTTGCACACGACAACTTACAACGTTGTCTTCCAAACACAGATGGGACAGCATATGATGCTGGCTGTTTTATGAGATACTCCACCATACCTTTGTTTGCTGATAATCAGACTATTGATATTGCACCCTTTTTAAAACAAGGAGGTTCAACGAAGAAGTGGGGTATTATAGGTGGTGTTGTTGTTGGAGCTGCTCTTCTGCTCCTTCTGTTGTTTGCTTGGATATGGTTTAGAAAATCTAAGGGGGTTCAAAGAGGTGACATATTGGGAGCAACTGAGTTGAAAGGTCCAGTTAACTACAAATATAATGATTTGAAAGCTGCAACAAAAAAGTTCAGTGCTGAAAACAAACTTGGGGAAGGAGGTTTTGGAGCTGTATACAAGGGTACTCTGAAAAATGGAAAAGTTGTTGCTGTAAAAAAACTAGTTTTAGGGAAATCAAGCAAGATGATGGATGATTTTGAAGGTGAAGTGAAGCTTATAAGTAATGTTCATCATCGGAATCTCGTTAGACTTCTTGGTTGCTGCAGCAAAGGTCAAGAGAGAATCTTGGTTTATGAGTATATGGCAAATAGCAGTCTTGACAGATTCTTATTCGGTAACAGAAAAGGCTTCCTTAGTTGGAAACAACGCTATAATATAATTTTAGGCACAGCAAAGGGACTAGCATATCTACATGAGGAATTCCACGTCTCGATCATACACAGAGATATCAAGACTGCTAATATCCTGTTAAATGATGATCTTCAGCCAAAAATTGCTGACTTTGGGTTGGCAAGGCTTCTCCCAGAGGATTGTTCTCATCTCAGCACAAAATTTGCAGGAACATTGGGATACACAGCGCCTGAGTATGCAATGCATGGGCAATTATCAGAAAAAGCTGATACCTACAGCTTCGGTATTGTAGTGTTAGAAATCATAAGTGGTCAAAAGAGTACTGATGTGAAGGGTGATGAGGAGAGCAGTGAATATCTTCTTCAACGATCATGGAAACTGTACGAGAGAGGGTGTCACCTGGAGCTGTTGGAAGAGGGCATTGACCCTGATGAATATGATGGGGAAGAAGTGAAGAGAATAATAGAAATTGGTTTATTATGCACTCAAGCTACAGCTGCAGCGAGGCCAACAATGTCTGAAGTAGTAGTATTACTCAAAAGCAGGAACTCAGTGGAGCACCTCCGACCAACTATGCCTGTGTTTGTTGGAACGAATGTGATGACTCGGGAAGGAAACTCTACAAGTTCATCCAATGCTAATGCTTCCATTTCTATTGTATCAGCTCGATGA 3738 0.4278 MHLSSLLPLTVLSILLWSLEGALGDPQILLLNKGCSQYNATDLSTFNQNLNATLNDLRVQVTNQSKYFATAQEARGQDPVYAMFQCRNYLSTTDCAACFSAAAAQIRNCSAGANGARVIYDGCFLRYESAGFFDQTTLAGNSMICGNQTAVVASDFNTSAQQVLKDLQIATPKISGFFAATKTQVSGAAIYAIAQCAETVSESGCLDCLTVGYNNIEVCLPNTEGRAFDAGCFMRYSETAFFADNQTIDITPFLQQGSSSKKGAIIGGVVGGVALIVIILALIALLRWYKKPKKVRRGDILGATDLKGPVSYRYKDLKAATKNFSDENKLGEGGFGDVYKGTLKNGKIVAVKKLFFGASGKIDDQFESEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANKSLDRFLFGEVKDSLNWKQRYDIILGTAKGLAYLHEDFHVCIIHRDIKTSNILLDDEMQPRIADFGLARLLPEDQSHLSTRFAGTLGYTAPEYAIHGQLSEKADAYSFGVVLLEIVSGQKNSELRTDANDGEFLLKRAWKLYEEDRHLELVDKKLDGKEYDVEEVKKVIEIALLCIQASAGARPTMSEVVASLKGKNSLGQIRPSMPLLVLITLIWWSSDNIHAYGAVENIQTNLLSKGCSAYNASNLRSFFANINETFAGLRAQISSDKNKHFAIEDKARGEVITYAMFQCRNYLSKTECLSCFDTATSQILNCSAANGARIIYDSCFLRYESERFYDETNEPGGGVSCGNMSSTVTGFKVAAQPVLMELQQATPKIKGFYAATKTPVVGGSAIYAVSQCVETAMKTSCLNCLQVAHDNLQRCLPNTDGTAYDAGCFMRYSTIPLFADNQTIDIAPFLKQGGSTKKWGIIGGVVVGAALLLLLLFAWIWFRKSKGVQRGDILGATELKGPVNYKYNDLKAATKKFSAENKLGEGGFGAVYKGTLKNGKVVAVKKLVLGKSSKMMDDFEGEVKLISNVHHRNLVRLLGCCSKGQERILVYEYMANSSLDRFLFGNRKGFLSWKQRYNIILGTAKGLAYLHEEFHVSIIHRDIKTANILLNDDLQPKIADFGLARLLPEDCSHLSTKFAGTLGYTAPEYAMHGQLSEKADTYSFGIVVLEIISGQKSTDVKGDEESSEYLLQRSWKLYERGCHLELLEEGIDPDEYDGEEVKRIIEIGLLCTQATAAARPTMSEVVVLLKSRNSVEHLRPTMPVFVGTNVMTREGNSTSSSNANASISIVSAR* 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0488 1245 Gene3D Phosphorylase Kinase; domain 1 293 400 - -
Vra10g0488 1245 Gene3D Phosphorylase Kinase; domain 1 900 1005 - -
Vra10g0488 1245 Gene3D Transferase(Phosphotransferase) domain 1 401 605 - -
Vra10g0488 1245 Gene3D Transferase(Phosphotransferase) domain 1 1006 1213 - -
Vra10g0488 1245 ProSitePatterns Protein kinases ATP-binding region signature. 330 353 IPR017441 GO:0005524
Vra10g0488 1245 ProSiteProfiles Gnk2-homologous domain profile. 745 849 IPR002902 -
Vra10g0488 1245 CDD STKc_IRAK 330 598 - -
Vra10g0488 1245 Pfam Protein tyrosine and serine/threonine kinase 327 596 IPR001245 GO:0004672|GO:0006468
Vra10g0488 1245 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 19 609 - -
Vra10g0488 1245 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 627 1240 - -
Vra10g0488 1245 MobiDBLite consensus disorder prediction 1225 1245 - -
Vra10g0488 1245 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1050 1062 IPR008271 GO:0004672|GO:0006468
Vra10g0488 1245 ProSitePatterns Protein kinases ATP-binding region signature. 935 958 IPR017441 GO:0005524
Vra10g0488 1245 ProSiteProfiles Protein kinase domain profile. 929 1217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0488 1245 ProSiteProfiles Gnk2-homologous domain profile. 636 740 IPR002902 -
Vra10g0488 1245 Gene3D - 634 740 IPR038408 -
Vra10g0488 1245 Gene3D - 28 132 IPR038408 -
Vra10g0488 1245 Gene3D - 751 848 IPR038408 -
Vra10g0488 1245 Gene3D - 140 241 IPR038408 -
Vra10g0488 1245 SMART serkin_6 929 1207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0488 1245 SMART serkin_6 324 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0488 1245 SUPERFAMILY Protein kinase-like (PK-like) 917 1228 IPR011009 -
Vra10g0488 1245 ProSiteProfiles Protein kinase domain profile. 324 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0488 1245 ProSiteProfiles Gnk2-homologous domain profile. 138 241 IPR002902 -
Vra10g0488 1245 Pfam Salt stress response/antifungal 647 737 IPR002902 -
Vra10g0488 1245 Pfam Salt stress response/antifungal 760 846 IPR002902 -
Vra10g0488 1245 Pfam Salt stress response/antifungal 35 129 IPR002902 -
Vra10g0488 1245 Pfam Salt stress response/antifungal 150 238 IPR002902 -
Vra10g0488 1245 CDD STKc_IRAK 935 1202 - -
Vra10g0488 1245 Pfam Protein kinase domain 930 1196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0488 1245 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Vra10g0488 1245 ProSiteProfiles Gnk2-homologous domain profile. 28 132 IPR002902 -
Vra10g0488 1245 SUPERFAMILY Protein kinase-like (PK-like) 308 596 IPR011009 -
Vra10g0488 1245 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 627 1240 - -
Vra10g0488 1245 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 19 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0488 Vra-Chr10 10720355 10729741 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0488 1 612 Receptor kinase-like Gene Family AT1G70520 37.460 1.53e-122 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra10g0488 Pkinase 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0488 - - vra:106775622 2335.45