Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0486 ATGAAGCTTTCAACATCAGGTTTGGGGCAGCAGGGATTAGAAGGGGAGAAGAAGTGTCTGAATTCTGAGCTATGGCATGCATGCGCGGGGCCCCTGGTGTCCCTACCAACTGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGTGAGCAGGTTGCTGCCACAACTAACAGAGAAATTGATGGACACATTCCCAATTACCCTAGCTTGCCACCCCAGTTAATTTGTCAACTGCACAATGTTACAATGCATGCAGATGTTGAAACGGATGAAGTGTATGCTCAAATGACATTGCAGCCATTGACTCCGCAAGAGCAGAAAGATACATTTCTTCCTATGGAATTGGGCATTCCCAGTAAGCAGCCATCAAATTATTTTTGCAAGACATTAACAGCCAGTGATACCAGTACACATGGAGGATTCTCTGTTCCTCGTCGTGCTGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAGCCACCAGCACAGGAACTGATTGCCAGGGATCTCCATGATGTTGAATGGAAATTTCGGCATATTTTTCGGGGACAGCCGAAACGACACCTTCTTACTACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTCGTGGCTGGAGATTCTGTGCTTTTCATTTGGAATGAGAAGAATCAGCTTCTTTTGGGAATACGCCGTGCCAATAGACCACAAACTGTAATGCCATCATCTGTTCTATCCAGTGATAGCATGCACATTGGACTTCTTGCTGCTGCTGCGCATGCTGCAGCGACTAATAGCTGTTTTACCGTGTTTTATAATCCGAGGGCTAGTCCATCTGAGTTCGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGATTCAGGATGCTTTTCGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACAATAACTGGCATAAGTGATTTGGATACTGTTCGGTGGCCGAATTCTCATTGGCGCTCTGTTAAGGTTGGTTGGGATGAATCAACAGCTGGGGAGAGACAACCACGAGTGTCTCTGTGGGAAATTGAGCCATTAACAACATTCCCTATGTACCCGTCATTATTTCCCCTTAGACTGAAACGTCCATGGCATCCTGGCTCCTCATCTCTGCATGATGGTAGAGATGAAGCAAGTAATGGGCTGATGTGGCTGAGGGGTGGAGCTGTAGACCAAGGTCTCAATTCGCTAAATTTTCAAGGAGCTGGTATGTTGCCCTGGATGCAGCAGAGAATGGACCCCACTTTACTAGGAAGTGATCAGAATCAACAGTACCAAGCCATGTTGGCAGCTGGGTTGCAGAATCTAGGTAGTGGATATCTCATGAAGCAACAAATGATGAATTTTCAACAGCCTTTCCACTATCTTCAGCAATCAGGAAACAGCAATTCTCCTTTGCAACTTCAGCCGCAGCAATCAGTTCAACAATCTGTATCTTCTAACATGCTGCAGCCACAGGCCCATGTACTGACAGAGAACCTCTCTCAGCACCTACTTCAGAAACCACACAACAATCAAGAAGTCCAAGCGCAACAGCAGCAGCAGCATTCTTATCAAGAATCGCTCTTAATTCCAAGTGATCAGCTCCATCAGAGACAACACTCCGGCGTTCCTTCACCATCGTATTCAAAACCAGATTTCTTGGATTCGAGCATGAAGTTCCCTGTTTCAGTTTCCCCCGGGCAAAACATGCTTAGTTCACTTTGTCCTGAAGGAAGTGGAAATCTCTTGAATTTATCAAGGAGTGGTCCGTCCTTGCTGAGTGAACAGTTACCTCAACAGCAATGGACTCAAAAGTATGCACCTGTGCAGGTCAATGCTTATGGAAGCACTGTGTCGCAGACACAATATTCTGGAAAAGATTCTGCAATGGTGCTACCACATCTTAACTCAGATGCCCAGAATTCAACTCTATTTGGTGTCAATATTGATTCATCTGGCCTTCTTCTTCCCACCACAGTCCCTGGTTACAGCACCTCATCTGCGGATACTAATTCATCAACAATGCCATTAGGGGAGTCTGGTTTCCAGGGTTCTCTGTTTGGTTGCATGCAAGATTCGTCAGAGTTGTTGCAAAGCGCAGGGCATGTTGACCCACAAAACCAGACTCAAACCTTTGTGAAGGTATACAAATCAGGGTCTGTTGGGCGCTCACTTGACATATCCCGGTTCAGCAGCTATCATGAACTGCGTGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGAAAGTTGGAAGACCCTCCTAGATCAGGCTGGCAGCTTGTGTTCGTTGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTCGTCAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGACATTCAGAAAATGGGGGAACAAGCAGTGGAATCCCTTGCTCTAGGTTCAGGACAAAGGCTCAATGGCACTGGTGCGGAGTCTCAGGACATTGTTTCTGGACCACCATCAATTGGCTCACTTGAATACTGA 2532 0.4609 MKLSTSGLGQQGLEGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREIDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDTVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSLHDGRDEASNGLMWLRGGAVDQGLNSLNFQGAGMLPWMQQRMDPTLLGSDQNQQYQAMLAAGLQNLGSGYLMKQQMMNFQQPFHYLQQSGNSNSPLQLQPQQSVQQSVSSNMLQPQAHVLTENLSQHLLQKPHNNQEVQAQQQQQHSYQESLLIPSDQLHQRQHSGVPSPSYSKPDFLDSSMKFPVSVSPGQNMLSSLCPEGSGNLLNLSRSGPSLLSEQLPQQQWTQKYAPVQVNAYGSTVSQTQYSGKDSAMVLPHLNSDAQNSTLFGVNIDSSGLLLPTTVPGYSTSSADTNSSTMPLGESGFQGSLFGCMQDSSELLQSAGHVDPQNQTQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPPRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEQAVESLALGSGQRLNGTGAESQDIVSGPPSIGSLEY* 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0486 843 MobiDBLite consensus disorder prediction 469 494 - -
Vra10g0486 843 SUPERFAMILY CAD & PB1 domains 712 791 - -
Vra10g0486 843 SMART B3_2 127 229 IPR003340 GO:0003677
Vra10g0486 843 MobiDBLite consensus disorder prediction 821 835 - -
Vra10g0486 843 SUPERFAMILY DNA-binding pseudobarrel domain 111 256 IPR015300 -
Vra10g0486 843 MobiDBLite consensus disorder prediction 542 561 - -
Vra10g0486 843 MobiDBLite consensus disorder prediction 821 843 - -
Vra10g0486 843 MobiDBLite consensus disorder prediction 542 559 - -
Vra10g0486 843 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Vra10g0486 843 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 828 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vra10g0486 843 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vra10g0486 843 Gene3D - 125 228 IPR015300 -
Vra10g0486 843 PANTHER AUXIN RESPONSE FACTOR 1 828 - -
Vra10g0486 843 Gene3D - 713 806 - -
Vra10g0486 843 CDD B3_DNA 126 227 IPR003340 GO:0003677
Vra10g0486 843 Gene3D - 291 363 - -
Vra10g0486 843 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Vra10g0486 843 ProSiteProfiles PB1 domain profile. 717 801 IPR000270 GO:0005515
Vra10g0486 843 Pfam AUX/IAA family 713 801 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0486 Vra-Chr10 10705527 10712528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0486 97 809 B3 DNA Binding Superfamily AT5G37020 68.006 0.0 921
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vra10g0486 AUX_IAA 2.7e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0486 - - gmx:100784373 1579.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0486 10 10705527 10712528 Vra6g0785 6 7661941 7673634 PCT