Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0468 ATGGAGACCGTTCCCTCTGTTCTCAAGAAATACTTTGGGTTTTCTAATTTTAAGCCTTATCAGAGAGAAGTTATTGAGAAAATTATTGAGAGAAGGGATTGTTTGGTAGTCATGGCTACTGGTAGTGGGAAGTCCTTGTGCTATCAGGTACCTCCCTTGGTTGTTAAAAAGACTGGGATAGTTGTGAGCCCTCTGATATCATTGATGCAAGACCAGGTGATGGCTTTAAAACAACGAGGTATTAGAGCTGAATATCTTGGAAGTGCTCAGAAGGATTTCACTGTGCACTCTAAAGCTGAACGTGGTCAATTTGACATTCTGTTCATGACTCCTGAGAAGGCATGCACAGTTCCTACAAGTTTTTGGTCCAACTTACTAAAGGCTGGAATTAGTCTTTTTGCTGTTGATGAAGCCCATTGCATATCGGAATGGGGACATGGATTTAGGGAGAAATACAAGCATTTAGACAAGTTACGTGAGGTCTTGCTTGATGTTCCTTTTGTTGGTCTAACTGCGACTGCTACTGAAAAGGTTCGATTTGAGATCATCAGTTCCCTGAAGATGGATAACCCTTATGTTACGATTGGTTCATTTGATCGCACAAATCTTTTCTATGGTGTCAAACCATTGAACCGTGGACAATCTTTTATTGATGAGCTTGTGTGGGAAATTTCAAAAGAAGTTGCTACGGGTGGTTCAACTATAATTTATTGCACAACAATCAAAGATGTAGAGCAGGTATTCAAATCATTTACAAAAGCAGGCATTGAGGCAGGAATGTACCATGGCCAAATGAATGGAAAAGCTCGAGAGGAGTCTCATAGATTGTTTGTTAGAGATGAACTGCAAGTCATGGTGGCCACCATTGCCTTTGGCATGGGTATAAATAAACCTAACATTAGACAAGTGATTCACTATGGTTGCCCTAAAAGTCTAGAATCCTACTACCAGGAAAGTGGACGATGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTACTACACAAGAAGTGACTTTGCAAAGGGCAACTTTTACTGTAGAGATGTAAAATCAGAAAAACAAAGAAAAGCTGTTATGGAGTCATTGCTTGCAGCTAAACGCTATTGTGTGCTGACAACTTGCAGAAGAAAGTTCTTGCTTGAATACTTTGGGGAAAAATTTTCAGCTGATAGATGCGGGAACTGTGATAATTGCAAAGTCTCAAAGAAGGAGCGAGACATGTCAACGGAAGCACCTAGTGATGAAATACTAACTTCAAACAACGTTGTTCAGCACCTAGTGATGAAATATGGAAATCATTTTCTTCAAGTTATTCAGAAACTGTCACAAGGACTAAACCTATCATTGGATGGGGAAGAAAGGGTCCCAACGGCTATTTTGAAAACTAATACAGTAACGAAAGTGTCTCCACTAACCAACAAATACAAGAAGTTGACATCAGCAAAGTTTGAAGCATGGAAAATGTGGCATAATGGTCTTTCTATTCATGATATTGCTAACTTAGAAGTTAGATCGGCTCCTATAAGAGAACAAACTGTTGTTGAATATCTACTCAAAGCTGCCCAAAAAGGATTACCTTTTTATTGGGTTAGATTCAACAAGATGATAGGACTCACTCAAGAGATCATGTCAGAAATTCAGCTTGCTATTTCAAAAGTTGTATCTACAGAGAAGTTGAAGCCTATAAAAAATGAATTGCCAGAAGATATAAGTTATCAGCACATCAAGACTTATTTGTCAATGCAAAACTGTGGTATATCCTTGGAAACAAATCAGTATGGAAGTAACCAAACCGGGAAAGATGATGAACTTGCACACAATGCTTCAAATTTGTCAGACTGTACTTTAGAAACATGTCCTGACAGGCAATGTGAAGATGACACTTCTGTAAAAGCTTTGGCTGAAGAACGTGACTTAGAAATGGATGAGGTACCTTCTTTACCTGTCAACGGTTCCGAGGAAGAGAAGCTTTCAAATGCCAGGGAAGGGAAATTCACAAGAAAACGACAAAGGGTCAGTGAAACGAAGGAAGTAAACTCAACTAGACTGAAGGCTACAGTGACTTCTGTTATAGAGTGGATGAAGAACCTTGATGAAGGGGCTACGTTGAGCAATATTTTTGAACACTTCAATGGATCCAGTGAAGATTCTGTGGTTGAACTGCTCAATTGCTTAGAGTGTGACTTTTTAATATATAGGAAAGGGAACGTGTACAGGGTTTTGTAA 2229 0.3921 METVPSVLKKYFGFSNFKPYQREVIEKIIERRDCLVVMATGSGKSLCYQVPPLVVKKTGIVVSPLISLMQDQVMALKQRGIRAEYLGSAQKDFTVHSKAERGQFDILFMTPEKACTVPTSFWSNLLKAGISLFAVDEAHCISEWGHGFREKYKHLDKLREVLLDVPFVGLTATATEKVRFEIISSLKMDNPYVTIGSFDRTNLFYGVKPLNRGQSFIDELVWEISKEVATGGSTIIYCTTIKDVEQVFKSFTKAGIEAGMYHGQMNGKAREESHRLFVRDELQVMVATIAFGMGINKPNIRQVIHYGCPKSLESYYQESGRCGRDGIASVCWLYYTRSDFAKGNFYCRDVKSEKQRKAVMESLLAAKRYCVLTTCRRKFLLEYFGEKFSADRCGNCDNCKVSKKERDMSTEAPSDEILTSNNVVQHLVMKYGNHFLQVIQKLSQGLNLSLDGEERVPTAILKTNTVTKVSPLTNKYKKLTSAKFEAWKMWHNGLSIHDIANLEVRSAPIREQTVVEYLLKAAQKGLPFYWVRFNKMIGLTQEIMSEIQLAISKVVSTEKLKPIKNELPEDISYQHIKTYLSMQNCGISLETNQYGSNQTGKDDELAHNASNLSDCTLETCPDRQCEDDTSVKALAEERDLEMDEVPSLPVNGSEEEKLSNAREGKFTRKRQRVSETKEVNSTRLKATVTSVIEWMKNLDEGATLSNIFEHFNGSSEDSVVELLNCLECDFLIYRKGNVYRVL* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0468 742 PANTHER DNA HELICASE RECQ FAMILY MEMBER 6 639 - -
Vra10g0468 742 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 6 639 - -
Vra10g0468 742 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 6 429 IPR004589 GO:0004386|GO:0006310
Vra10g0468 742 MobiDBLite consensus disorder prediction 646 666 - -
Vra10g0468 742 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 216 370 IPR001650 -
Vra10g0468 742 Pfam Helicase conserved C-terminal domain 221 325 IPR001650 -
Vra10g0468 742 Pfam Helix-turn-helix domain 485 580 IPR029491 -
Vra10g0468 742 Gene3D - 337 526 IPR036388 -
Vra10g0468 742 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 340 IPR027417 -
Vra10g0468 742 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
Vra10g0468 742 Gene3D - 199 335 IPR027417 -
Vra10g0468 742 Pfam RecQ zinc-binding 339 400 IPR032284 -
Vra10g0468 742 CDD DEXHc_RecQ 6 199 - -
Vra10g0468 742 CDD SF2_C_RecQ 200 335 - -
Vra10g0468 742 SMART ultradead3 13 208 IPR014001 -
Vra10g0468 742 Gene3D - 1 198 IPR027417 -
Vra10g0468 742 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
Vra10g0468 742 SMART helicmild6 245 326 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0468 Vra-Chr10 10568718 10580780 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0468 12 342 Eukaryotic Initiation Factors Gene Family AT3G19760 22.222 1.12e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0468 K03654 - gmx:100797777 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0468 10 10568718 10580780 Vra10g0468 10 10568718 10580780 ECH