Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0462 ATGGCGAAAAAAGATCAAGGACTTGCCATAGGAATCGACCTTGGCACAACCTACTCCTGTGTTGCAGTGTGGTGTGAACGTCATTGTCGAGTGGATATCATTCATAACGACCAAGGCCATAACACCACTCCTTCTGTTGTTGCTTTCACATACCATGAAAGGTTGATTGGTAATGCTGCTAAAAACCAGGCTGCCACCAATCCACAAAACACCGTCTTTGATGCCAAGAGATTGATAGGTAGAAAATACAGTGATCCTGTTGTTCAGAAAGATATGATGTTATGGCCATTCAAGGTTGTCGCTGGTGTTAATGACAAACCTATGATCACCCTTAACTATAAGGGTAAGGAGAAACAATTTTGTGCTGAGGAAATTTCGTCCATGGTCCTGGTGAAGATGAAAGAGATTGCAGAGGGCTATTTGGAAACCAGGGTGAAGAATGCGGTGGTTACTGTGCCTGCTTATTTCAATGACTCTCAGCGTAAGTCTACCATAGATGCTGGAACCATTAATTTGAGTTCAAAACTTTGCTCAGAAGACAGGAAAAAGATCAGTTCTGCAATAAATAAGGCCACAGAGTTACTTGATGGTGGTCAGCAGGAGGAGGAAATAGATGTGTTTGAGGATCATCTGGAAGAGCTTATTAACCTCTTTGAACGTTTTGGTGGAAAGTCTGGTTAG 681 0.4244 MAKKDQGLAIGIDLGTTYSCVAVWCERHCRVDIIHNDQGHNTTPSVVAFTYHERLIGNAAKNQAATNPQNTVFDAKRLIGRKYSDPVVQKDMMLWPFKVVAGVNDKPMITLNYKGKEKQFCAEEISSMVLVKMKEIAEGYLETRVKNAVVTVPAYFNDSQRKSTIDAGTINLSSKLCSEDRKKISSAINKATELLDGGQQEEEIDVFEDHLEELINLFERFGGKSG* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0462 226 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 171 218 IPR029048 -
Vra10g0462 226 Pfam Hsp70 protein 9 170 IPR013126 GO:0005524|GO:0140662
Vra10g0462 226 Gene3D - 73 124 - -
Vra10g0462 226 Gene3D - 5 173 - -
Vra10g0462 226 SUPERFAMILY Actin-like ATPase domain 9 170 IPR043129 -
Vra10g0462 226 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vra10g0462 226 PRINTS 70kDa heat shock protein signature 8 21 - -
Vra10g0462 226 PRINTS 70kDa heat shock protein signature 38 50 - -
Vra10g0462 226 PRINTS 70kDa heat shock protein signature 60 68 - -
Vra10g0462 226 PRINTS 70kDa heat shock protein signature 148 168 - -
Vra10g0462 226 PANTHER HEAT SHOCK 70 KDA PROTEIN 171 222 - -
Vra10g0462 226 PANTHER HEAT SHOCK 70 KDA PROTEIN 4 170 - -
Vra10g0462 226 PANTHER HEAT SHOCK PROTEIN 70KDA 171 222 IPR013126 GO:0005524|GO:0140662
Vra10g0462 226 PANTHER HEAT SHOCK PROTEIN 70KDA 4 170 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0462 Vra-Chr10 10498637 10500461 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0462 1 170 Calmodulin-binding Proteins AT1G56410 72.941 1.43e-82 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0462 K03283 - vra:106774805 339.347