Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0460 ATGCCTTTGGCCAAGTCTACCATAGATGCTGGAACCATTGCTGGCCTTAACATCATACGGATAATCAACGAACCAACTGCTGCAGCTATTGCATATGGTCTTGACAGAAGGATTAATAATTGTGGTAAGATCTTTGAAGTTAAGGCAACAGCGGGAAACACTCACCTTGGAGGAGAGGACATTGATAACAGAATGGTGAACTACTTTCTGGAGAAAATAAAGAAGGAAAAGAAAGTGGACATTAGTGGAAATCCTAAAGCATTAAGGAGGTTGAGAAGTGCCTGTGAGAGGGCCAAAAGGACACTGTCACATGCTGTCAGTGCCAGAATTGAGGTAGATGGTTTATCTAATGGCATTGACTTTTGTTCTTCNATCACTCGTGCAAGATTTGAGGAAATCAACATGGAGCTCTTTAAACAGTGTATGGAGACAGTAGATAGGTGTCTTGCTGATGCAAAAATGGACAAGAGAAGTATGCATGATATTGTTCTTGTTGGTGGGTCTTCTAGGATTCCCAAAGTGCAAGAATTATTGCAAGATTTCTTTGAGGGTAAGGATCTGTGCAAAAGCATAAACCCTGATGAAGCTGTAGCCTATGGTGCTGCTGTGCAGGCTGCTTTGTTGAGTGTAGGTATTAAGAATGTTCCTGACGTGGTGTTGCTGGATGTAATACCGTTATCACTTGGTATTAATATAAAGGGAGATATCATGAGTGTAATGATTCCAAGGAATACTACTATTCCTGTAAAGAGGACACATACATATTTTACTAGTGCAGATAACGTATCATCTGTTCGAATAAAGGTTTATGAGGGTGAGAGAACAAGATCCAGTGATAACAATTTGTTGAGCTCTTTCAATCTTTCTGGCTTTCCTAAAGCTCCTAGGGGCCATCCTTTTGATGTGTGCTTTGCCATAGATGAAAACGGTATACTATCTGTCTCTGCTAAGGAAGAAACAACTGGCATCAGCAATAAGATCATCATAACCAATGACATAGAACGATTGCCAACGGAAGAAATTAATAGAATGATTCAAGAAGCAGAGGTATACAAAGCTAAAGATATGAAATTCCTTAGGAAGGCCAAAACAATGAATAAAATTGATGACTATGCTTACAAGATAAAGAAAGCTTTGGAAAAAGAGAATTACAGTTCAAAAGTTTGCTCAGAAGACAGGAAAAAGATCAGTTCTGCAATAACTAAGGCCACAGAGTTACTTGATGGTGGTCAGCAGGAGGAGGAAATAGAAGTGTTTGAGGATCATCTGGAAGAGCTTATTAACCTCTTTGAACGTTTTGGTGGAAAGTCTGGTTAG 1317 0.3948 MPLAKSTIDAGTIAGLNIIRIINEPTAAAIAYGLDRRINNCGKIFEVKATAGNTHLGGEDIDNRMVNYFLEKIKKEKKVDISGNPKALRRLRSACERAKRTLSHAVSARIEVDGLSNGIDFCSSITRARFEEINMELFKQCMETVDRCLADAKMDKRSMHDIVLVGGSSRIPKVQELLQDFFEGKDLCKSINPDEAVAYGAAVQAALLSVGIKNVPDVVLLDVIPLSLGINIKGDIMSVMIPRNTTIPVKRTHTYFTSADNVSSVRIKVYEGERTRSSDNNLLSSFNLSGFPKAPRGHPFDVCFAIDENGILSVSAKEETTGISNKIIITNDIERLPTEEINRMIQEAEVYKAKDMKFLRKAKTMNKIDDYAYKIKKALEKENYSSKVCSEDRKKISSAITKATELLDGGQQEEEIEVFEDHLEELINLFERFGGKSG* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0460 438 Gene3D Actin; Chain A, domain 4 58 140 - -
Vra10g0460 438 Gene3D - 4 40 - -
Vra10g0460 438 ProSitePatterns Heat shock hsp70 proteins family signature 3. 162 176 IPR018181 -
Vra10g0460 438 Gene3D - 43 188 - -
Vra10g0460 438 SUPERFAMILY Actin-like ATPase domain 6 36 IPR043129 -
Vra10g0460 438 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 214 366 IPR029047 -
Vra10g0460 438 PANTHER HEAT SHOCK 70 KDA PROTEIN 42 434 - -
Vra10g0460 438 PANTHER HEAT SHOCK 70 KDA PROTEIN 5 42 - -
Vra10g0460 438 PANTHER HEAT SHOCK PROTEIN 70KDA 42 434 IPR013126 GO:0005524|GO:0140662
Vra10g0460 438 PANTHER HEAT SHOCK PROTEIN 70KDA 5 42 IPR013126 GO:0005524|GO:0140662
Vra10g0460 438 PRINTS 70kDa heat shock protein signature 159 175 - -
Vra10g0460 438 PRINTS 70kDa heat shock protein signature 191 211 - -
Vra10g0460 438 PRINTS 70kDa heat shock protein signature 217 236 - -
Vra10g0460 438 PRINTS 70kDa heat shock protein signature 297 313 - -
Vra10g0460 438 SUPERFAMILY Actin-like ATPase domain 41 208 IPR043129 -
Vra10g0460 438 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 365 430 IPR029048 -
Vra10g0460 438 Pfam Hsp70 protein 44 431 IPR013126 GO:0005524|GO:0140662
Vra10g0460 438 Pfam Hsp70 protein 5 37 IPR013126 GO:0005524|GO:0140662
Vra10g0460 438 Gene3D - 366 436 IPR029048 -
Vra10g0460 438 Gene3D - 189 206 - -
Vra10g0460 438 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 213 365 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0460 Vra-Chr10 10434949 10439626 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0460 5 429 Calmodulin-binding Proteins AT3G12580 58.444 0.0 522
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0460 K03283 - gmx:102667572 587.415