Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0449 ATGGGAAGAAGACCGGCGCGTTGTTACCGTCAGATAAAGAACAAACCGTATCCGAAGTCGCGGTTCTGCCGCGGCGTTCCGGATCCGAAGATCCGAATATACGACGTGGGGATGAAGAAGAAAGGCGTGGACGAGTTTCCCTTCTGCGTGCACCTCGTCTCCTGGGAGAAGGAGAACGTGTCCAGCGAGGCCTTGGAGGCGGCGCGCATCGCCTGCAACAAGTACATGGCGAAGTTTGCGGGGAAGGACGCGTTCCACCTGCGCGTGAGGGTGCACCCCTTCCACGTGCTCCGTATCAACAAGATGCTATCGTGCGCCGGGGCGGACAGGCTCCAGACCGGGATGAGGGGGGCGTTCGGAAAGCCGCAGGGGACGTGCGCGAGAGTGAGTATTGGACAGGTGTTGCTCTCCGTTCGATGTAAGGATGGGAATGGTCAGCACGCTCAGGAGGCTCTTCGCCGCGCCAAGTTCAAGTTCCCTGGCCGTCAGAAGATTATTGTCAGCAGAAAGTGGTTCTTGGGTGTCACGGACCTTTGGCAAATCGTGCGCCCGGAAGAGCTTTCTTACCAGCTACTGCTTAGGTCATTTACCAGTAGGAAATTCATGGAGTGTATGGCTTTTCTTTTCACCTCGTGA 636 0.5692 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVSIGQVLLSVRCKDGNGQHAQEALRRAKFKFPGRQKIIVSRKWFLGVTDLWQIVRPEELSYQLLLRSFTSRKFMECMAFLFTS* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0449 211 PIRSF RPL10a_RPL10e 1 179 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vra10g0449 211 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 172 - -
Vra10g0449 211 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 171 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vra10g0449 211 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Vra10g0449 211 PANTHER 60S RIBOSOMAL PROTEIN L10 1 172 IPR001197 GO:0003735|GO:0005840|GO:0006412
Vra10g0449 211 Gene3D Ribosomal protein L10e/L16 1 189 IPR036920 GO:0003735|GO:0005840|GO:0006412
Vra10g0449 211 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Vra10g0449 211 SUPERFAMILY Ribosomal protein L16p/L10e 4 171 IPR036920 GO:0003735|GO:0005840|GO:0006412
Vra10g0449 211 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0449 Vra-Chr10 10207009 10209337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0449 1 171 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 92.982 1.91e-118 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0449 K02866 - han:110869666 352.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0449 10 10207009 10209337 Vra10g0449 10 10207009 10209337 ECH
Vra6g0847 6 8645221 8647779 Vra10g0449 10 10207009 10209337 ECH
Vra4g0659 4 12259117 12262920 Vra10g0449 10 10207009 10209337 ECH