Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0448 ATGTATCTTTCAAAGAGTTTCAAGCTTGAAGTTGTTGTCATCCTGTGGTTTTGCTGCTATTTGCTACATGCTGCTGGGCAGAATAACATAACTAGTAATGTTGAAGTTGAAGCATTGATAGCCATTAAGAGTAGTTTGATTGATCCTAATGGAAATTTAAGCAATTGGAATCATGGAGACCCATGTACATCAAGGTGGAAAGGAGTTTTGTGCTTCAATGAAACACAGGAGGATGGCTATCTGCATGTTGAAGAATTGCAATTACTGAGTTTGCAACTGTCTGGAACCTTGGCACCAGAGCTTGGCAAATTAACATACATGAAAAGATTGAACTTTATGTGGAACAACATAAGTGGCAGTATCCCAAAGGAAGTTGGCAATATCAAATCTTTGGAACTATTGCTCCTGAATGGAAATAATTTAACAGGTCCACTACCAGAGGAGATTGGCTATCTTCCAAATCTGGATAGAATACAAATAGATCAGAACCATATATCAGGATCTCTTCCTACGTCATTTGCAAATCTGAACAAGACAAAGCATTTTCACATGAACAACAACTCACTCAGCGGGCAAATCCCACCAGAGCTTTCTCGATTACCAAATCTTGTTCACCTTCTTCTCGACAATAACAACTTATCTGGATATCTTCCCCCTGAGCTGTACAAGTTGCCAAATTTACTTATCATTCAACTTGATAACAATAACTTCGAAGGAAATAGTATTCCTGATACGTATGGCAACATGTCAAAGTTGTTGAAGATGAGCCTTAGGAATTGCAGTTTGACAGGACCAGTTCCTGACTTAAGCAGGATACCTCACCTTCTTTATCTTGACCTTAGTTTCAACCAGTTGAACGAATCAATTCCTGCCAATAAGCTTTCTGAGAATATCACAACCATTGATTTATCAAACAACCACCTAACTGGAAATATTCCATCTTACTTTGTTGATCTTCCACGTCTTCAGAAGTTGTCACTTGCAAACAATTCATTGAATGGCACTGTTTCATCCTCTATTTGGACGAATAAGACTTCAAATGGAACAGAAAACTTTCTTTTGGAGTTGCAAAATAATAGCCTTACAGCCATATCAGGAAGTATTGATCTTCCTCCAAATGTCACAGTTGTGCTTGATGGGAATCCCCTTTGCTCAAACAAAACCCTTGATCACTTCTGTGGACCTGAAGGTGCTACTGTAACAAATGGCTCATTCACTATAAACCCCAGTTCATGTAAACCTCAAGCATGCCCTCCTCCTTATGAGTACTCTGTTGATTGTTTCTGTGCACTTCCATTGCTTGTTGCCTATCGGCTGAAAAGTCCTGGATTTTCAGACTTTACTCCGTATTTGGATGATTTTGAGACCTACATGACTACTGGTCTTCAATTATCTACTGATCAGCTAGAATATACTTTTTATTGGCAAGCAGGACCTCGGTTGAGAATGGACTTGAAATTTTTTCCTCTATATGTTAATAACACTAGCAATCATACTTTCAATAGAAGTGAGCTCCTACGGATCACAAGCATGTTCACAGGATGGCTAATTCAAGACAGTGATCTGTTTGGACCTTATGAACTGCTTGGCTTCGATCTTTTGGGTCCTTACAAGGATGAAATTGGCAAGGATTCAAAATCAGGAATAAGCACAGGTGCACTGGTTGGCATAGTTGTAGGGGGAATTGCTTGTGCAGTGACATTATCTGCAATTGTTACCCTTCTTATATTGAGAATCAAAATGAGAGGTTACCATACTGTTTCAAAGCGACGTCAGGCATCTAAAATCTCTATAAAAATTGATGGTGTAAGGGCCTTTACTTATGGAGAATTGTCCTCCGCTACAAACAATTTCAACATTTCTTCTCAAGTTGGACAAGGTGGCTATGGGAAGGTTTATAAAGGGACTCTTTCTGATGGCACAGTTGTTGCCATAAAACGCGCTCAAGAGGGATCTCTGCAAGGTGAGAAGGAGTTCCTCACAGAAATATCATTACTATCAAGGTTACATCATCGCAACCTTGTTTCTCTGATTGGATACTGTGATGAAGAAGGTGAACAGATGCTGGTTTATGAATTTATGTCTAATGGCACATTGAGGGATCACCTTTCTGTTACAGCGAAAGAACCCCTGACTTTTGCCATGAGATTGAAGATTGCACTAGGGGCAGCTAAAGGCCTCATGTATCTACACACAGAAGCCGATCCTCCAATATTCCACCGAGACGTAAAGGCCAGCAACATATTGTTAGACTCTAAATTTTCGGCAAAAGTGGCTGATTTTGGACTTTCGCGTCTTGCCCCAGTTCCAGATATGGAAGGAGTTGTTCCTGGTCATGTATCTACGGTGGTAAAGGGGACGCCGGGGTACCTTGATCCAGAGTACTTCTTAACTCACAAGTTGACAGACAAGAGTGATGTTTATAGTCTTGGTGTTGTATTTCTGGAACTTTTGACTGGGATGCATCCTATCTCACACGGAAAAAATATTGTTAGAGAGGTTAATATTGCGTACCAATCAGGTGTAATATTTTCAATGATCGATGGACGCATGGGGTCCTATCCGTCTGAGCATGTAGAGAAATTTTTGACATTGGCCTTGAAGTGTTGCGAAGATGAGCCAGAGGCACGGCCTAGAATGGCAGAAGTGGTTAGAGAGCTTGAAAACATATGGTCTACAATGCCAGAATCAGATACCAAGAAAGCTGAATTTATGTCTAGTGATTCTGGCAAAACTGACATTCACAGTATACCATCTTCATCCTCTGCTTCTGCTATGAAGACTCCTTTTGTATCAGGAGATGTGTCTGGTAGCGACCTTGTTAGTGGAGTAATACCAAGCATCAAGCCAAGATAG 2856 0.4044 MYLSKSFKLEVVVILWFCCYLLHAAGQNNITSNVEVEALIAIKSSLIDPNGNLSNWNHGDPCTSRWKGVLCFNETQEDGYLHVEELQLLSLQLSGTLAPELGKLTYMKRLNFMWNNISGSIPKEVGNIKSLELLLLNGNNLTGPLPEEIGYLPNLDRIQIDQNHISGSLPTSFANLNKTKHFHMNNNSLSGQIPPELSRLPNLVHLLLDNNNLSGYLPPELYKLPNLLIIQLDNNNFEGNSIPDTYGNMSKLLKMSLRNCSLTGPVPDLSRIPHLLYLDLSFNQLNESIPANKLSENITTIDLSNNHLTGNIPSYFVDLPRLQKLSLANNSLNGTVSSSIWTNKTSNGTENFLLELQNNSLTAISGSIDLPPNVTVVLDGNPLCSNKTLDHFCGPEGATVTNGSFTINPSSCKPQACPPPYEYSVDCFCALPLLVAYRLKSPGFSDFTPYLDDFETYMTTGLQLSTDQLEYTFYWQAGPRLRMDLKFFPLYVNNTSNHTFNRSELLRITSMFTGWLIQDSDLFGPYELLGFDLLGPYKDEIGKDSKSGISTGALVGIVVGGIACAVTLSAIVTLLILRIKMRGYHTVSKRRQASKISIKIDGVRAFTYGELSSATNNFNISSQVGQGGYGKVYKGTLSDGTVVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMSNGTLRDHLSVTAKEPLTFAMRLKIALGAAKGLMYLHTEADPPIFHRDVKASNILLDSKFSAKVADFGLSRLAPVPDMEGVVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMHPISHGKNIVREVNIAYQSGVIFSMIDGRMGSYPSEHVEKFLTLALKCCEDEPEARPRMAEVVRELENIWSTMPESDTKKAEFMSSDSGKTDIHSIPSSSSASAMKTPFVSGDVSGSDLVSGVIPSIKPR* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0448 951 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 9 922 - -
Vra10g0448 951 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Vra10g0448 951 MobiDBLite consensus disorder prediction 909 931 - -
Vra10g0448 951 Gene3D Ribonuclease Inhibitor 31 296 IPR032675 -
Vra10g0448 951 SMART serkin_6 618 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0448 951 SUPERFAMILY L domain-like 45 391 - -
Vra10g0448 951 CDD STKc_IRAK 624 890 - -
Vra10g0448 951 Gene3D Phosphorylase Kinase; domain 1 588 693 - -
Vra10g0448 951 ProSiteProfiles Protein kinase domain profile. 618 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0448 951 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 9 922 - -
Vra10g0448 951 Gene3D Transferase(Phosphotransferase) domain 1 694 912 - -
Vra10g0448 951 ProSitePatterns Serine/Threonine protein kinases active-site signature. 738 750 IPR008271 GO:0004672|GO:0006468
Vra10g0448 951 SMART LRR_typ_2 272 297 IPR003591 -
Vra10g0448 951 SMART LRR_typ_2 152 175 IPR003591 -
Vra10g0448 951 SMART LRR_typ_2 319 343 IPR003591 -
Vra10g0448 951 SMART LRR_typ_2 200 224 IPR003591 -
Vra10g0448 951 Pfam Leucine rich repeat 153 213 IPR001611 GO:0005515
Vra10g0448 951 Gene3D Ribonuclease Inhibitor 297 386 IPR032675 -
Vra10g0448 951 MobiDBLite consensus disorder prediction 901 940 - -
Vra10g0448 951 ProSitePatterns Protein kinases ATP-binding region signature. 624 646 IPR017441 GO:0005524
Vra10g0448 951 SUPERFAMILY Protein kinase-like (PK-like) 603 908 IPR011009 -
Vra10g0448 951 Pfam Protein tyrosine and serine/threonine kinase 620 887 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0448 Vra-Chr10 10192674 10206639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0448 18 900 Receptor kinase-like Gene Family AT5G01950 59.487 0.0 1003
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Vra10g0448 PK_Tyr_Ser-Thr 3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0448 - - gmx:100786467 1625.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0448 10 10192674 10206639 Vra10g0448 10 10192674 10206639 ECH
Vra6g0813 6 8031881 8046562 Vra10g0448 10 10192674 10206639 PCT