Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0445 ATGATGGCTGGCAAAGTTTACTCCATATTGAATTGCCACTGTATTATTCCTTCCAGAAAACAACTCGCCATGAAGTTTCCTTCAACTTCAGACATTTCTTTTCTTTTTGTCATAGTGATTCTTTTCCCTTTAGTTATTGCTGATCTAAGTTCAGATAAGCAAGCCCTTCTTGATTTTGCTAATGCTATCCCCCACCGGCGAAACCTTACATGGAATCCAACCACCTCAGTCTGTGAATCATGGGTAGGCATCACTTGCAATGAAGATAGAACTCGTGTTGTTAATGTTCGGCTTCCTGGTGTTGGACTAGTTGGCACCATCCCATCAAATACACTTGGCAAGCTTGATGCTGTCAAAATCATTAGCCTTAGGTCCAACCTACTCAGTGGAAATCTCCCTGCTGACATTGCTTCTCTTCCTTCTCTTCAGTATCTCTATCTCCAGCATAACAACCTTTCTGGTGATATACCTGCATCATTGTCTCCCCAACTTGTTGTGCTTGATTTGTCATATAATTCCTTCACCGGTGGCATTCCTAAGACATTTCAAAATTTTTCAGAACTAACTAGTTTGAATCTCCAAAACAACTCCCTATCTGGAGAGATACCTAATCTCAATATCACTCAGCTTAGGCTTTTGAATTTAAGCTACAACCATTTGAATGGCTCTATTCCTAAAGGTCTTCAGAGTTTTCCAAATTCTTCCTTTGAAGGAAACTCACTTTTATGTGGACCTCCCCTAAAGCCGTGCTCAGGGGTTCCTCCTGGACCTTCTCCTGCCTTGACTCCACCTCCATCATCAACTCCAGGGAGACAAAACTCAAAATACAAGTTGAGTAAAATAGCTATCATTGCAATTGGTGTTGGAGGAGCTGTGGTGTTATTCTTTATTATTCTTGTCATTGTTATTTGCTGTGTAAAGAAAGAAGGCAGCGGAGGTTCCAATGTGATGAAAGGAAAGGGTTCTGGTGGTGGCAGGGGTGAGAAGCCAAAAGAAGAGTTTGGGAGTGGGGTTCAAGAACCTGAGAAGAACAAGTTGGTTTTCTTTGAGGGCAGTTCTTATAATTTTGATCTTGAGGATTTGCTGAGAGCTTCAGCTGAAGTCCTGGGAAAGGGTAGTTATGGCACTGCCTATAAGGCCATACTGGAGGAGTCAATGACTGTTGTGGTGAAAAGATTGAAAGAAGTTGTAGTAGGGAAGAAGGACTTTGAACAGCAGATGGAAATTATGGGAAGAGTTGGACAACACACAAATGTTGTACCCCTTCGCGCTTATTACTATTCAAAAGATGAAAAGCTTCTGGTTTATGACTATATCCTAGGTGGTAACCTACACACACTCTTGCATGGTGGAAGAACAGGTGGAAGAACTCCCTTAGACTGGGAGTCCCGGATAAGAATATCCCTTGGAAGTGCCAAAGGACTTGCTCACATTCATTCTGTTGGTGGTCCCAAATTCTCACATGGAAACATCAAGTCCTCAAATGTTCTTCTCAACCAAGATAATGATGGCTGCATTTCTGATTTTGGCCTTGCCCCTCTTATGAATATTCCTGCTACTCCTTCTAGAGCTGCTGGTTATCGTGCTCCAGAGGTGATTGAAACCCGAAAACACTCTCATAAATCAGATGTGTACAGCTTCGGTGTCCTCCTTCTTGAGATGCTTACTGGGAAGGCTCCCCTGCAATCTCCTGGACGTGATGACATGGTTGATCTCCCTAGGTGGGTTCAGTCTGTTGTTAGGGAAGAATGGACTGCAGAAGTTTTTGATGNTGAGCTTATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAGATGTTGCAAATAGCCATGGCCTGTGTGGCCAAGGTGCCAGATATGAGGCCTAACATGGATGAAGTAGTAAGAATGATCGAAGAGATTCGGCAATCTGACTCAGAGAACCGACCATCTTCTGAAGAAAATAAATCCAAGGACTCAAATGTTCAGACTCCATAG 1977 0.4279 MMAGKVYSILNCHCIIPSRKQLAMKFPSTSDISFLFVIVILFPLVIADLSSDKQALLDFANAIPHRRNLTWNPTTSVCESWVGITCNEDRTRVVNVRLPGVGLVGTIPSNTLGKLDAVKIISLRSNLLSGNLPADIASLPSLQYLYLQHNNLSGDIPASLSPQLVVLDLSYNSFTGGIPKTFQNFSELTSLNLQNNSLSGEIPNLNITQLRLLNLSYNHLNGSIPKGLQSFPNSSFEGNSLLCGPPLKPCSGVPPGPSPALTPPPSSTPGRQNSKYKLSKIAIIAIGVGGAVVLFFIILVIVICCVKKEGSGGSNVMKGKGSGGGRGEKPKEEFGSGVQEPEKNKLVFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESMTVVVKRLKEVVVGKKDFEQQMEIMGRVGQHTNVVPLRAYYYSKDEKLLVYDYILGGNLHTLLHGGRTGGRTPLDWESRIRISLGSAKGLAHIHSVGGPKFSHGNIKSSNVLLNQDNDGCISDFGLAPLMNIPATPSRAAGYRAPEVIETRKHSHKSDVYSFGVLLLEMLTGKAPLQSPGRDDMVDLPRWVQSVVREEWTAEVFDXELMRYQNIEEEMVQMLQIAMACVAKVPDMRPNMDEVVRMIEEIRQSDSENRPSSEENKSKDSNVQTP* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0445 658 MobiDBLite consensus disorder prediction 632 658 - -
Vra10g0445 658 Gene3D Phosphorylase Kinase; domain 1 331 438 - -
Vra10g0445 658 Pfam Leucine rich repeat N-terminal domain 50 87 IPR013210 -
Vra10g0445 658 Gene3D Ribonuclease Inhibitor 49 204 IPR032675 -
Vra10g0445 658 Gene3D Transferase(Phosphotransferase) domain 1 440 657 - -
Vra10g0445 658 SUPERFAMILY Protein kinase-like (PK-like) 367 641 IPR011009 -
Vra10g0445 658 Gene3D Ribonuclease Inhibitor 205 251 IPR032675 -
Vra10g0445 658 ProSiteProfiles Protein kinase domain profile. 363 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0445 658 MobiDBLite consensus disorder prediction 253 272 - -
Vra10g0445 658 Pfam Protein kinase domain 366 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0445 658 ProSiteProfiles Leucine-rich repeat profile. 187 209 IPR001611 GO:0005515
Vra10g0445 658 SUPERFAMILY L domain-like 51 250 - -
Vra10g0445 658 Pfam Leucine rich repeat 106 152 IPR001611 GO:0005515
Vra10g0445 658 Pfam Leucine rich repeat 162 220 IPR001611 GO:0005515
Vra10g0445 658 ProSitePatterns Protein kinases ATP-binding region signature. 369 400 IPR017441 GO:0005524
Vra10g0445 658 MobiDBLite consensus disorder prediction 315 336 - -
Vra10g0445 658 MobiDBLite consensus disorder prediction 632 649 - -
Vra10g0445 658 PANTHER OS05G0588300 PROTEIN 16 658 - -
Vra10g0445 658 PANTHER LRR RECEPTOR-LIKE KINASE 16 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0445 Vra-Chr10 10125726 10130350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0445 26 656 Receptor kinase-like Gene Family AT5G58300 67.610 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra10g0445 Pkinase 5.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0445 - - gmx:100796171 1102.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0445 10 10125726 10130350 Vra10g0445 10 10125726 10130350 ECH
Vra10g0445 10 10125726 10130350 Vra6g0817 6 8089429 8094234 PCT