Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0443 ATGTCCCTCCAACCAACCATGAATCTCTCCCACCCCTTCAACCCACCAACTTCAAGCTCTAATTTTTACACCCACCCACCATGCAAACCCTCCAAAAACCCCCAACCACCGCACAAGAAGCTCCTCCGTGTCATCCTCACAGACCACGACGCCACCGACTCCGAATCCTCCGGCGACGACGAAGGCCCCAAAAACCCATCTAAACACAAAAAAGTGAAAAGAGAAATCACCCACATCACTATAAACTTGCCCTTTATCCCGGAACCCCCAATGGTAACCCCTTCTTTTTCCACTCACCCCACCCCTTTAACCCGACCCGAGAAGCGGCCCGCCGCCCCACGCCGCCGGAGCAAGTTCCGTGGTGTCCGGCAGAGGCCATGGGGACGATGGACAGCCGAGATCCGCGACCCGACCCAAAGAAAACGGGTCTGGCTCGGCACCTTCGACACGGCAGAGGAAGCCGCCGCCGTGTACGACGAGGCCGCCGTGAATCTCAAGGGGCCTGACGCCGTCACCAACTTCCCCCTCGCCGCTACCGGAAAAAGAGAACTCCACGTTTCGCCCCCGGAGGCGGCCTGCTCCGGCGACGGTTTCTCGTCGCCGACGTCTGTCCTCACATACTGCGACGGGGACTCCTCGCCTTTCGGTGGTTTCCGTTACGGCGAGGTCGATGCATTCGGGTTCGACATCGACGCGCCGTTTAGTCTTACTGATGTTAACATGGGCGTGCTGAATCAGCGCTACGCGAAGGAAGAGTTCGGCGAGTTTGACCCGGACGAGTTCCTGACGTGGCCAAATTAA 801 0.5868 MSLQPTMNLSHPFNPPTSSSNFYTHPPCKPSKNPQPPHKKLLRVILTDHDATDSESSGDDEGPKNPSKHKKVKREITHITINLPFIPEPPMVTPSFSTHPTPLTRPEKRPAAPRRRSKFRGVRQRPWGRWTAEIRDPTQRKRVWLGTFDTAEEAAAVYDEAAVNLKGPDAVTNFPLAATGKRELHVSPPEAACSGDGFSSPTSVLTYCDGDSSPFGGFRYGEVDAFGFDIDAPFSLTDVNMGVLNQRYAKEEFGEFDPDEFLTWPN* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0443 266 MobiDBLite consensus disorder prediction 1 74 - -
Vra10g0443 266 CDD AP2 117 175 IPR001471 GO:0003700|GO:0006355
Vra10g0443 266 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
Vra10g0443 266 SUPERFAMILY DNA-binding domain 117 176 IPR016177 GO:0003677
Vra10g0443 266 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Vra10g0443 266 MobiDBLite consensus disorder prediction 1 28 - -
Vra10g0443 266 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 35 262 - -
Vra10g0443 266 PIRSF PTI6 12 266 IPR017392 GO:0003700
Vra10g0443 266 Gene3D AP2/ERF domain 117 177 IPR036955 GO:0003700|GO:0006355
Vra10g0443 266 MobiDBLite consensus disorder prediction 42 68 - -
Vra10g0443 266 Pfam AP2 domain 117 167 IPR001471 GO:0003700|GO:0006355
Vra10g0443 266 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 35 262 - -
Vra10g0443 266 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Vra10g0443 266 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Vra10g0443 266 MobiDBLite consensus disorder prediction 90 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0443 Vra-Chr10 10117214 10123111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0443 23 207 AP2-EREBP Transcription Factor Family AT4G27950 41.872 1.80e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vra10g0443 AP2 4.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0443 K13434 - gmx:102660028 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0443 10 10117214 10123111 Vra10g0443 10 10117214 10123111 ECH
Vra10g0443 10 10117214 10123111 Vra6g0818 6 8104584 8107097 PCT