Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0441 ATGTCGTATGTGCCTCCGCACCTCCGAAATAACGGCTCCGCCACCGTCGCCACCGCCAGAACCCCCTCCGTAACCCTAGACAACAACAACCACCACCACCACAACCTTAACAACCACCACAAGCTTGCATTCACCTCCAACAACAACAACACCACCAACGCCAATGGCTCTCCCTCGCTCCCCTCCTTCCACAATGCCTCTCGCTGGAGCTCCGCCGCACCTCCGTCGCCGAGGATTTTCGCCACACCTGACCCCGTCTTCCCGCAATGGCAACCCTCTGAACGCGCTTCGCGCATGACTCCGGAGCAGATTGAAGAGGTCCGTTCCCGGCTTAATCTTGATGTTACTGTTGCATCTGATTCTCCTCCTGCACCTGCACCAATAGAATCGTTTACTGATATGTGTTTGCACTCAAGTATCATGAAGGATATTGCTTACCATGAATACACCAGGCCAACTTCGATCCAGGCACAAGCCATGCCAATTGCTCTCAGTGGAAGGGATCTATTGGGTTGTGCTGAAACTGGAAGTGGAAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTAGCCCAACCTTCAATTCGGCGCAATGATGGTCCTCTGGCATTAGTTTTGGCTCCTACCAGAGAACTCGCTCAACAAATAGAAAAGGAGGTTAAAGCTTTTAGCAGATCCCTCGAGTCATTAAAAACTGCTATTGTTGTGGGCGGAACAAACATTGAAAAGCAGAGGGCAGAACTTAGAGCAGGGATTGAAATAGCAGTTGCCACGCCAGGAAGATTCATTGATCACTTGCAACAAGGCAATACTTCCCTCTCTAGAATTTCTTTTGTTGTTCTAGACGAAGCAGATAGAATGCTGGATATGGGTTTTGAACCACAGATAAGAGAGGTAATGAGAAGTCTTCCTGAGAAGCATCAAACATTGCTTTTTAGTGCAACAATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTGGCTAGTTCGGTGCAAGTGAAAGTGGGGAAAGTGAGTAGCCCAACAACTAATGTTTCACAAACGCTTGTGAAAATTTCTGAAAACGAGAAGATTGACCGACTTCTAGACTTACTTGTAGAGGATGCATCACAGGCTGAAAAATGTGGTCATCCATTTCCATTAACAATTGTGTTTGTTGAGAGGAAGACAAGGTGCGATGAAGTTGCTGAAGCATTGGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGTCGCAGTCAGAGTGAAAGAGAGGCTGCCTTGCATGATTTTCGGAGTGGCTCTACCAACATTTTGGTTGCTACTGATGTTGCATCTCGTGGCTTGGATGTCACTGGAGTGTCCCATGTCATCAATCTAGATCTTCCCAAGACCATGGAAGATTATGTGCACCGGATTGGAAGGACGGGGCGTGCAGGATCAACTGGATTAGCTACTTCATTTTACACTGATCGTGACATGTTCCTTGTTGCAAATATAAGGAAGGCAATAGCTGACGCCGAATCTGGGAACACGCTGACATTTGCAACCGGAAAGGTTGCTAGACGGAAGGAGAAAGAAGCTGCAGCTGCACAAAAAGAGGCAAATATTGCTTTATCCAAACAGTTAGGATTGGGAGCTGCTTCAATTAACATCGAAGATAAATATAAATTCATGATTACTGCCGCAAACATTAAAAGAGAGGGCGCAGCAGATAGTGCCTGGGACGATTAA 1725 0.4672 MSYVPPHLRNNGSATVATARTPSVTLDNNNHHHHNLNNHHKLAFTSNNNNTTNANGSPSLPSFHNASRWSSAAPPSPRIFATPDPVFPQWQPSERASRMTPEQIEEVRSRLNLDVTVASDSPPAPAPIESFTDMCLHSSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPSIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRAELRAGIEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRSLPEKHQTLLFSATMPVEIEALAKEYLASSVQVKVGKVSSPTTNVSQTLVKISENEKIDRLLDLLVEDASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLVANIRKAIADAESGNTLTFATGKVARRKEKEAAAAQKEANIALSKQLGLGAASINIEDKYKFMITAANIKREGAADSAWDD* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0441 574 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 282 290 IPR000629 -
Vra10g0441 574 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 360 518 IPR001650 -
Vra10g0441 574 CDD SF2_C_DEAD 348 486 - -
Vra10g0441 574 SMART helicmild6 396 477 IPR001650 -
Vra10g0441 574 Gene3D - 89 340 IPR027417 -
Vra10g0441 574 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 160 336 IPR014001 -
Vra10g0441 574 PANTHER ATP-DEPENDENT RNA HELICASE DBP2-LIKE 35 539 - -
Vra10g0441 574 Coils Coil 215 235 - -
Vra10g0441 574 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 129 157 IPR014014 GO:0003724
Vra10g0441 574 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 497 IPR027417 -
Vra10g0441 574 CDD DEADc 140 337 - -
Vra10g0441 574 SMART ultradead3 148 351 IPR014001 -
Vra10g0441 574 Coils Coil 518 538 - -
Vra10g0441 574 Pfam DEAD/DEAH box helicase 153 323 IPR011545 GO:0003676|GO:0005524
Vra10g0441 574 Pfam Helicase conserved C-terminal domain 360 477 IPR001650 -
Vra10g0441 574 Gene3D - 342 536 IPR027417 -
Vra10g0441 574 MobiDBLite consensus disorder prediction 41 72 - -
Vra10g0441 574 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 35 539 - -
Vra10g0441 574 MobiDBLite consensus disorder prediction 41 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0441 Vra-Chr10 10084246 10093246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0441 129 499 Eukaryotic Initiation Factors Gene Family AT1G72730 34.667 5.98e-67 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0441 K12823 - gmx:100787545 983.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0441 10 10084246 10093246 Vra10g0441 10 10084246 10093246 ECH