Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0440 ATGTTTTGGACAACATTATTGACCGCTGCAAAGCTTCGCGGGAAGCGCTTCAGGCTGCCACCGGGACCGTTTTCTGTACCGATATTTGGTAACTGGCTTCAGGTTGGCGATGACCTGAATCACCTTAACCTTGCCGACATTGCACGTCGCTTTGGCGACATATTTCTCCTTCGCATGGGGCAGCGGAATTTGGTGGTGGTCTCTTCGCCGGAGCTCGCGAAGGAGGTTCTCCACACACAGGGTGTGGAGTTCGGCTCGCGCACGCGCAACGTCGTCTTCGACATCTTTACCGGGAAAGGCCAGGACATGGTGTTCACCGAGTACGGTGATCACTGGCGCAAGATGCGCCGCATAATGACGGTCCCGTTCTTCACCAACAAGGTCGTGCAGCAGTACCGCGTCGGGTGGGAGGACGAGGCGGCGCGTGTAGTGGAGGACGTACGCCGCAGCCCTGACGCCGCGGCCGGAGGGATCGTTCTGCGGCGGAGACTGCAACTCATGGTGTATAACATGATGTATAGGATCATGTTCGATAGAAGGTTCGAGAACGAGGAGGACCCGTTGTTTCAGAAGCTTCGAGTTTTGAACGGTGAGAGGAGTCGTTTGGGGCAGAGCTTTGAGTACAACTACGGTGATTTTATCCCCGTTTTGCGGCCATTTTTGCGTGGGTACTTGAAGATTTGCAAGGAGGTTAAGGACACGAGGTTCAAACTCTTCAAGGATTATTTCATTGAGGAACGAAAGAATCTTGAAAATACCAAGAAAAGGGACAATGGAGGACTTAAATGCGCCATCGATCACATTTTGGATGCTCAGAAAAAAGGAGAGATTAGTGAGGATAATGTCCTCTACATTGTCGAGAACATTAACGTTGCTGCAATCGAGACAACTCTGTGGTCAATTGAATGGAGCATTGCTGAGCTTGTGAACCACCCAGAGATCCAAAACAAGGTGAGGGAGGAGATTGCGAGAGCTGTAGGAGCAGGACAGCAAGTGACAGAGCAAGACATTCACAAGCTAACTTACCTACAGGCAGTGATAAAGGAAACACTTCGGCTGAGAATGGCAATTCCACTCCTTGTCCCACACATGAACCTCCATGATGCTAAACTTGGAGGCTATGACATCCCTGCAGAAAGCAAGATCTTGGTGAATGCATGGTGGCTTGCCAACAACCCTGCTCAGTGGAAGAAGCCAGAGGAGTTCAGGCCTGAAAGGTTTTTGGAGGAAGAGTCGAAAGTAGAGGCGAATGGGAATGACTTGAGATACCTTCCATTTGGTGTTGGGAGGAGGAGCTGCCCTGGAATTATCCTTGCATTGCCTATTCTGGGCATTACTTTGGGGCGTTTGGTCCAAAATTTTGAGCTCTTGCCTCCCCCAGGACAAGACAAGCTTGATACCACTGAGAAAGGGGGCCAGTTTAGTCTGCACATACTCAACCACTCAACCATTGTCGCTAAACCAATATCATTTGCTTAG 1479 0.5037 MFWTTLLTAAKLRGKRFRLPPGPFSVPIFGNWLQVGDDLNHLNLADIARRFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTEYGDHWRKMRRIMTVPFFTNKVVQQYRVGWEDEAARVVEDVRRSPDAAAGGIVLRRRLQLMVYNMMYRIMFDRRFENEEDPLFQKLRVLNGERSRLGQSFEYNYGDFIPVLRPFLRGYLKICKEVKDTRFKLFKDYFIEERKNLENTKKRDNGGLKCAIDHILDAQKKGEISEDNVLYIVENINVAAIETTLWSIEWSIAELVNHPEIQNKVREEIARAVGAGQQVTEQDIHKLTYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGYDIPAESKILVNAWWLANNPAQWKKPEEFRPERFLEEESKVEANGNDLRYLPFGVGRRSCPGIILALPILGITLGRLVQNFELLPPPGQDKLDTTEKGGQFSLHILNHSTIVAKPISFA* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0440 492 PRINTS P450 superfamily signature 292 309 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0440 492 PRINTS P450 superfamily signature 345 356 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0440 492 PRINTS P450 superfamily signature 424 433 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0440 492 Pfam Cytochrome P450 20 481 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0440 492 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 426 435 IPR017972 GO:0005506|GO:0016705
Vra10g0440 492 PRINTS E-class P450 group I signature 48 67 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0440 492 PRINTS E-class P450 group I signature 72 93 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0440 492 PRINTS E-class P450 group I signature 167 185 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0440 492 PRINTS E-class P450 group I signature 281 298 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0440 492 PRINTS E-class P450 group I signature 301 327 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0440 492 PRINTS E-class P450 group I signature 344 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0440 492 PRINTS E-class P450 group I signature 385 409 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0440 492 PRINTS E-class P450 group I signature 423 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0440 492 PRINTS E-class P450 group I signature 433 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0440 492 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 7 490 - -
Vra10g0440 492 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 7 490 - -
Vra10g0440 492 Gene3D Cytochrome P450 9 481 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0440 492 SUPERFAMILY Cytochrome P450 20 469 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0440 Vra-Chr10 10077046 10079511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0440 10 488 Monolignol Biosynthesis Gene Families AT2G30490 81.002 0.0 804
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0440 K00487 - nnu:104593756 853.203