Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0438 ATGAAAGACACAATTCAAACTCCAGTCACACTCACCGGCTTGCTCCGCCACGTCGCTGCCAAATTCCCCTCCCGTCGAGCCATCTCCGTCGCCGCCAAATACGACATCACCCACTCCCGCCTCCACCACCTCACAGAATCCACCGCCGCTCGATTGATCGCTGCCGGAATCAAACCGGGCGACGTTGTCGCCCTCGTCTTCCCCAACACAGTCGAGTTTGTTGTCATGTTTTTAGCCGTCATTCGAGCACGAGCCACAGCGGCGCCGTTAAACCCAGCTTACACGGCCGATGAGTTTGAGTTTTACTTATCCGACTCAGATTCAAAGCTTCTGGTCACATCATTGGAAGGAAACACGCCGGCTCAAGCTGCAGCTTCGAAACTCAATATCGCTCACGCCGCGGCTTCTTTGACCCAAAGTGAAAACGAAGAAGCCGAGCTGAGTCTCTCGTTGAACCACTCTTTTGACTCGGTTGAGTCACTCGTTAACGATCCTGCTGACGTGGCGCTTTTCCTTCACACCTCCGGAACCACGAGCCGTCCCAAAGGGGTGCCGCTGACTCAGCATAACTTGCTCTCTTCCGTGAGGAACATTGACTCGGTGTATCGACTCACTGAGTCTGACTCGACGGTGATTGTGCTTCCGCTGTTCCACGTGCACGGGTTGATCGCTGGGCTGCTGAGTTCTCTAGGCGCCGGCGCGGCGGTTGCGTTGCCGGCGGCAGGGAGGTTCTCCGCTTCAGCATTCTGGAAGGACATGGTTAAGTACAACGCCACGTGGTACACTGCGGTTCCTACCATACACCAGATCATACTGGATCGCCACTTTAACAATCCCGAACCGGTTTACCCGAGGCTCCGGTTCATCCGAAGCTGCAGCGCGTCTCTTGCACCGGCTATCATGGGTAAACTGGAGGAGGCTTTCAGTGCCCCCGTCTTGGAGGCTTATGCAATGACGGAAGCCTCGCATCTCATGGCTTCGAACCCTTTGCCCCAAGATGGGCCCCACAAGGCCGGGTCGGTTGGGAAGCCCGTAGGCCAAGAAATGGGTATACTGGATGAGTCGGGTCGGGTCCAGGAGGTCGGAGTTAGTGGAGAGGTTTGCATTCGCGGACCCAATGTAACGAAAGGATATAAAAACAACGTTGGAGCTAACACGGCGGCGTTTCAGTTCGATTGGTTTCACACCGGTGATATTGGATACTTTGATTCTGATGGTTATTTGCACCTAGTGGGTCGGATCAAGGAACTCATCAACCGCGGAGGTGAAAAGATATCACCAATAGAAGTTGATGCTGTCCTTCTTTCACACCAGGACATTGCTCAAGCAGTTGCTTTCGGAGTGCCTGATCCAAAGTATGGGGAGGAGATATATTGTGCTGTGATCCCAAGAGAAGGTTCAAACATTGATGAGGCAGAGTTGCTAAGATACAGCAAGAAGAATCTTGCATCCTTCAAAGTCCCCAAAAAGGTTTTCATCACTGATGCTTTGCCCAAGACTGCCACAGGAAAGATTTTGCGCCGACTTGTGGCAGAACACTTCGTCTCTCATATTTGA 1557 0.5299 MKDTIQTPVTLTGLLRHVAAKFPSRRAISVAAKYDITHSRLHHLTESTAARLIAAGIKPGDVVALVFPNTVEFVVMFLAVIRARATAAPLNPAYTADEFEFYLSDSDSKLLVTSLEGNTPAQAAASKLNIAHAAASLTQSENEEAELSLSLNHSFDSVESLVNDPADVALFLHTSGTTSRPKGVPLTQHNLLSSVRNIDSVYRLTESDSTVIVLPLFHVHGLIAGLLSSLGAGAAVALPAAGRFSASAFWKDMVKYNATWYTAVPTIHQIILDRHFNNPEPVYPRLRFIRSCSASLAPAIMGKLEEAFSAPVLEAYAMTEASHLMASNPLPQDGPHKAGSVGKPVGQEMGILDESGRVQEVGVSGEVCIRGPNVTKGYKNNVGANTAAFQFDWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHQDIAQAVAFGVPDPKYGEEIYCAVIPREGSNIDEAELLRYSKKNLASFKVPKKVFITDALPKTATGKILRRLVAEHFVSHI* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0438 518 PANTHER OXALATE--COA LIGASE-LIKE 7 517 - -
Vra10g0438 518 Pfam AMP-binding enzyme 16 420 IPR000873 -
Vra10g0438 518 Pfam AMP-binding enzyme C-terminal domain 429 504 IPR025110 -
Vra10g0438 518 SUPERFAMILY Acetyl-CoA synthetase-like 8 516 - -
Vra10g0438 518 CDD FACL_fum10p_like 23 512 IPR045310 GO:0016874
Vra10g0438 518 Gene3D - 9 413 IPR042099 -
Vra10g0438 518 Gene3D - 414 516 IPR045851 -
Vra10g0438 518 ProSitePatterns Putative AMP-binding domain signature. 171 182 IPR020845 -
Vra10g0438 518 PANTHER ACYL-COA SYNTHETASE 7 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0438 Vra-Chr10 10068353 10071156 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0438 10 518 Monolignol Biosynthesis Gene Families AT4G05160 30.418 6.72e-58 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0438 K22133 - gmx:100817853 878.241