Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0435 ATGGGTTCTGATATTTGCGTCGTTAATGGTTCGTGCACTCATGAATGGAGAAAGGGGTGGCCTCTGCGATCTGGTGGATTCGCCCAACTGTGCTGCAAGTGCGGATTTATGGAGGAGTGGAAGGGTGACATCCATGAGCCATTATCCGCATACGAGAATTCAGTTTTCTGCAGCAAATTTCATCACCAACAAACTGGTTGGAGGGACTGTAACTTTTGCAACAAGATGAGGAATATTGAAAATCCAAATGGACCTGTTTCATTGATAAAAAATAATTCAAGTGATCGGCCTTCTCGTTCTGAGGGAAGACTGTTTGCACGAGGTGTTGATGAAGGAAAGCTTATGCAATTCTGCAAAATTATTGAAGCTAGTGAATCCAGCCGATGGAATAATGCTCAAAAAGATGGCACCATTTCACGTCATGGGAACAACAACCAAGAAGCCAAATGTTCATTCGGGGAAGGAGACATTGGTTTTTCAAAAGTGGTGAAGCCATCTGTTCAGCCATTAACATTTGCTACATTAGAAAATAATAGGTCACCATGGGAGATTAAAAACATCCACGAAGCAAATGTGCAGCCATCATTGAGTATGTACCTGGGAAATGGATCTGGGAACAACTCTGTCCTGCCTTCTGCTGGAGAGGTTGTGGAAGGAAGACTTGAGCGAAAAACGTCTCCACCTTTTCATCAAGGGCAAAGAACTCGCCCTATATTTCCAAAACCAGTGAAGAGTGGGCTTACCATGAATGTGGAAATAGATAAAGGTACAAATTCTCAATCTCGAGTTGCTCGGCCACCTGCAGATGGCAGAGGAAAGAATCAGTTACTTCCTCGATACTGGCCGAGGATTACCGATCAAGAGCTGGAGCGACTATCTGGAGATTTGAAATCCACCGTTGTGCCATTATTTGAGAAGGTATTAAGTGCCAGTGATGCTGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGCGCTGAGGCATATTTCCCTTCTATTTCACAATCTGAGGGTGTTCCTTTGCGAATGCAAGATGTGAAGGGGAACGAGTGGACATTTCAGTTCAGATTTTGGCCAAATAACAACAGTAGAATGTACGTATTGGAGGGTGTGACCCCATGCATACAGACCATGCAGTTACGCGCTGGTGATACTGTAACATTTAGTCGGATAGACCCAGGAGGCAAACTTGTAATGGGTTTCAGAAGGGCATCAAATTCTGCAGATACACAGGATACCTCCACATCTGCACAATCTAATTCAGCAAAGGGAGCCACCTCTGCTGGAACTGAGAATCTGCCATCAGGAAGTAATCATGCCAATCTTCTTCTTTCAATGAAGGGGAATGTGGAACCTAAGTTTAATGGACAAAGAGAACATCCACTTTTGGGTACTGGAACTTCTGGGTTGCTTATAACTGAAACTAATGGGATGATGACAAACAATACTTCACTACAGCGAAAAGTTTCGGTTTTAGAGAAGAAGAAGACTCGTAATATTGGGCCTAAAAGTAAGAGGCTGCTTATTGACAATGAAGATGCTAGGGAGCTAAAACTTACATGGGAAGAAGCACAGGATTTACTTCGTCCTCCTCCTAGTGTCAAGCCAAGCATTGTCACAATTGAGGACCAAGTATTTGAAGAATATGATGAACCCCCAGTTTTTGGAAAGAGAACTATATTCAGTACCTGTTCTTCTGGGGTGAAGGAACAGTGGGCTCAATGTGATGATTGCTCTAAATGGCGAAAGCTTCCAGTTGATGCTCTTCTTCCTGCCAATTGGACATGTTTTGACAATGCTTGGGATTCAAGAAGATGTTCATGCACAGTACCTGAAGAGCTAAGTTCAGGGGAATTAGAAAGTCTTTTGAAAACCGACAAAGATTTTAAGAAGCGACGAAGTGATGAAAAGAGCAAGTCAATCCAAGAATACGAGGCATCTGGCTTGGAAGCTCTTGCCAGTGCAGCAGCCCTGGGAGAAAATCTTGTTGACACGGCCGAATCATCGGCCGGACCCACCACCAAGCATCCCAGACACCGTCCCGGCTGCTCTTGCATTGTGTGCATCCAGCCACCGAGTGGCAAGGGGCGACACAAGCCGACATGCGCATGCAACGTGTGCCTGACCGTGAAGCGGCGGTTCAAAACTCTCATGCTGCGAAAGAAGAAACGGCAATCCGAACGCGAAGCAGAAGCTGCCCAGAAAGATCAAGTTCTCCCCAAAGAGGAGTCAGATACCAATGAAACATCAAGAGATGATGGAACTCAGTTGGAGAAAGAGGTAGTAGGACTAAGCAGAAGTCAAGCTGAAGTGGGTGAGTCCAGTGCTGCTGGACAAATTGATCTGAATTCTGATCCCAACCGTGAAGACATGGTTGATTTATCAGCAATTTTCTTTTGTGAATCAGAACATGAATATATGAACCAAAATGATCCAAGAAGCTACAACAATGAATTGCAGAATGGTGAGAATTCTTCTTTGCACACTCCTCAATCCAATGGAGAAGGTCAGAGACACTTGTCTGATCTAAGAAGCTTTGCATCCATTATGTGGAACCAAGAAAGAAGAGATGAGGAAGACAGTGAACCCAACCAAAACCAAAACAATCTTTGTTAA 2616 0.4438 MGSDICVVNGSCTHEWRKGWPLRSGGFAQLCCKCGFMEEWKGDIHEPLSAYENSVFCSKFHHQQTGWRDCNFCNKMRNIENPNGPVSLIKNNSSDRPSRSEGRLFARGVDEGKLMQFCKIIEASESSRWNNAQKDGTISRHGNNNQEAKCSFGEGDIGFSKVVKPSVQPLTFATLENNRSPWEIKNIHEANVQPSLSMYLGNGSGNNSVLPSAGEVVEGRLERKTSPPFHQGQRTRPIFPKPVKSGLTMNVEIDKGTNSQSRVARPPADGRGKNQLLPRYWPRITDQELERLSGDLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPSISQSEGVPLRMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQTMQLRAGDTVTFSRIDPGGKLVMGFRRASNSADTQDTSTSAQSNSAKGATSAGTENLPSGSNHANLLLSMKGNVEPKFNGQREHPLLGTGTSGLLITETNGMMTNNTSLQRKVSVLEKKKTRNIGPKSKRLLIDNEDARELKLTWEEAQDLLRPPPSVKPSIVTIEDQVFEEYDEPPVFGKRTIFSTCSSGVKEQWAQCDDCSKWRKLPVDALLPANWTCFDNAWDSRRCSCTVPEELSSGELESLLKTDKDFKKRRSDEKSKSIQEYEASGLEALASAAALGENLVDTAESSAGPTTKHPRHRPGCSCIVCIQPPSGKGRHKPTCACNVCLTVKRRFKTLMLRKKKRQSEREAEAAQKDQVLPKEESDTNETSRDDGTQLEKEVVGLSRSQAEVGESSAAGQIDLNSDPNREDMVDLSAIFFCESEHEYMNQNDPRSYNNELQNGENSSLHTPQSNGEGQRHLSDLRSFASIMWNQERRDEEDSEPNQNQNNLC* 872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0435 871 ProSiteProfiles B3 DNA-binding domain profile. 304 405 IPR003340 GO:0003677
Vra10g0435 871 CDD B3_DNA 302 403 IPR003340 GO:0003677
Vra10g0435 871 MobiDBLite consensus disorder prediction 808 871 - -
Vra10g0435 871 ProSiteProfiles Zinc finger CW-type profile. 566 616 IPR011124 GO:0008270
Vra10g0435 871 Gene3D - 569 624 - -
Vra10g0435 871 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 818 - -
Vra10g0435 871 MobiDBLite consensus disorder prediction 403 440 - -
Vra10g0435 871 MobiDBLite consensus disorder prediction 768 782 - -
Vra10g0435 871 MobiDBLite consensus disorder prediction 722 759 - -
Vra10g0435 871 Gene3D - 282 409 IPR015300 -
Vra10g0435 871 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL1 3 818 - -
Vra10g0435 871 SMART B3_2 304 405 IPR003340 GO:0003677
Vra10g0435 871 MobiDBLite consensus disorder prediction 719 788 - -
Vra10g0435 871 Pfam B3 DNA binding domain 304 404 IPR003340 GO:0003677
Vra10g0435 871 SUPERFAMILY DNA-binding pseudobarrel domain 302 403 IPR015300 -
Vra10g0435 871 MobiDBLite consensus disorder prediction 809 839 - -
Vra10g0435 871 MobiDBLite consensus disorder prediction 404 440 - -
Vra10g0435 871 Pfam CW-type Zinc Finger 571 613 IPR011124 GO:0008270
Vra10g0435 871 MobiDBLite consensus disorder prediction 257 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0435 Vra-Chr10 10028795 10035944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0435 1 809 B3 DNA Binding Superfamily AT2G30470 45.261 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra10g0435 B3 5.3e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0435 - - var:108341743 1670.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0435 10 10028795 10035944 Vra10g0435 10 10028795 10035944 ECH
Vra10g0435 10 10028795 10035944 Vra6g0824 6 8246070 8256651 PCT