Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0427 ATGGTTGTGGGGATATCCTTCTTTGTCCTATTTTCATCCACTCTGAGTCTAGCTTTTCTACTCTCAAAATGGTTCTCAAAAGGTCAAACAAAAAATGTTCCAAAAGGGTCTCTGGGGTACCCTATCATCGGAGAGACCCTTAGTTTTCTTAAAGCACAGAGACAAGACAAGGGTTCTGAATGGTTGGAAGAACGGATATCTAAGTATGGTCCTGTCTTCAAAACCTCCTTAATGGGGTCCACCACAGTGTTTGCAATTGGACAAGCAGGAAACAAGTTTATCCTTGGTTCACCAGATGATGTGCTTTCTGCTAAGAAACCCATCACCCTGAAAAAGATATTTGGAAGACAAAGCTTAGTTGAACTCACAGGACACAGATACAAGTTAGTGAAGGGGGAAATGCTGAAATTCTTGAAACCCGAATGCCTTCAGAAGTATGTAAAAAAGATGGATGAATTGGTGAATGCTACATTACTGAGAGAACTGACAGAGAAAGAAACAATGGGAGTTGTGGTGTTGATGAAGAAACTGTCCTATGATTTATCATGCAATATATTGTTTGACATTAAGGATGAGCACACCAGGGAGGCTTTGTTTGTGGATTTCACTTTGGCATTTAAAGCAATTCATTCTCTTCCCATCAATTTCCCTGGTACCACATTTTGGAGAGGCCAAAGAGCCAGGGCAAGAATTGTTGACAGAATGGTTCCTATTTTGAACAAAAGATGGGAGGAACTGTCTAAAGGAGTCTTAAGCTCTACCAATGACATGCTTTCTGGCTTGCTTGCACTAAGGGATGAAAATGATCAACCTCTAGCACATGATTTAATTGCAGACAATTTTATATTTTTACTTGTTGCTAGTCATGACACATCTGCCACTCTCATGAGCTTGATGATATGGAAGTTATCTAGAGATCCAGAAGTTTACAAAAAAGTTTTACAAGAACAAATGGAAATCATAAAGCAAAGGGAAGGAACAGAAGAGAGACTAACATGGGAAGAGATTCAAAAGATGAAATATACATGGAGACTGGCTGAGGAACTGATGAGGATGATCCCTCCCTTGTTTGGCAGCTTTAGGAAAGCAGTTAAAGATACTAGCTTTCAAGGATATGACATACTAAAAGGGTGGCAGGTGTATTGGGCAGCATATGGAACCCATATGAAGGATGATATATTTGAGAATCCAGAGAAGTTTGACCCATCTCGTTTTGAGAATCCGACAAAGCCAATTCCACCTTATTCTTACCTTCCATTTGGTGCAGGGATTCATTACTGCATAGGAAACGAGTTTGCCAGGATTGAGACCTTGACAACTATTCACAACTTTGTGAAACTGTTTGAATGGTCTCAAGTAAACCCAGAGGAACCAATTACCCGTCAACCAATGCCATATCCATCCATGGGTCTCCCAATTAAGATCAAACCGAGATCTAATATGCCTTGA 1449 0.4017 MVVGISFFVLFSSTLSLAFLLSKWFSKGQTKNVPKGSLGYPIIGETLSFLKAQRQDKGSEWLEERISKYGPVFKTSLMGSTTVFAIGQAGNKFILGSPDDVLSAKKPITLKKIFGRQSLVELTGHRYKLVKGEMLKFLKPECLQKYVKKMDELVNATLLRELTEKETMGVVVLMKKLSYDLSCNILFDIKDEHTREALFVDFTLAFKAIHSLPINFPGTTFWRGQRARARIVDRMVPILNKRWEELSKGVLSSTNDMLSGLLALRDENDQPLAHDLIADNFIFLLVASHDTSATLMSLMIWKLSRDPEVYKKVLQEQMEIIKQREGTEERLTWEEIQKMKYTWRLAEELMRMIPPLFGSFRKAVKDTSFQGYDILKGWQVYWAAYGTHMKDDIFENPEKFDPSRFENPTKPIPPYSYLPFGAGIHYCIGNEFARIETLTTIHNFVKLFEWSQVNPEEPITRQPMPYPSMGLPIKIKPRSNMP* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0427 482 PRINTS P450 superfamily signature 287 304 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0427 482 PRINTS P450 superfamily signature 344 355 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0427 482 PRINTS P450 superfamily signature 418 427 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0427 482 PRINTS P450 superfamily signature 427 438 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0427 482 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 420 429 IPR017972 GO:0005506|GO:0016705
Vra10g0427 482 Gene3D Cytochrome P450 25 478 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0427 482 PRINTS E-class P450 group IV signature 60 83 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0427 482 PRINTS E-class P450 group IV signature 388 406 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0427 482 PRINTS E-class P450 group IV signature 411 427 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0427 482 PRINTS E-class P450 group IV signature 427 445 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0427 482 SUPERFAMILY Cytochrome P450 31 478 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0427 482 Pfam Cytochrome P450 34 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra10g0427 482 PANTHER CYTOCHROME P450 FAMILY PROTEIN 6 476 - -
Vra10g0427 482 PANTHER CYTOCHROME P450 26 6 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0427 Vra-Chr10 9883456 9886002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0427 1 453 Cytochrome P450 AT4G19230 30.702 5.79e-65 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0427 - - gmx:100790209 835.099