Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0426 ATGCATTTCTATGAATCTATGGATTTCAGATTCAGCACACCGAATCACCCACCAATAGAAAACATCCTTGGTGGAAAACTGAATGTATGGGACCTCTTCTCTAAAAGAAAACACACAAAATCTAAACTCAAACATCATTTCATCTCTCTGTCAGAGCTCTTCCTAGGAATACTCCTAATCATGGCGGAGTGTGTGACGGACATGGCTCAGGCTGCTCTTTGCCGCAACAGCACCGCTGCAGCACATTTGAAACTGATTTCCATCTTCACAATCTTCGTAACCAGCGTGATGGGTGTGTCCATGCCTGTCATGCTAGCAAGATACTTTCAAGGAAAGTCTCTCTATGATATAGCTATATTGGTAATCAAATGTTTTGCTGCGGGTGTTATTCTTGCCACCTCATTGGTTCATGTGTTACCGGACGCATTTGCCGCACTCTCCGATTGTCAGGTGGCATCGCAACATCCTTGGAAGGATTTTCCCTTTGCTGGCCTGGTGACTCTTGGTGGGGTTCTGCTGGCTCTGCTCGTCGACACTGTTGCCAGCTCTCACGTGGAGCATACGCACTACACGCCGGTGGAAACGGAGGAGAAGGAGGGTGGCGCTCGCTCATTGAGTATCGAGCTGGTAAGTGGCGGCGGTGAAGCGGATAGGGTTGAAGAGTTGATGAGGTTGAAGCAGAAGCTGGTGTCGCAGGTGTTGGAGATAGGTATAATCTTTCACTCTGTTATCATTGGAGTCACTATGGGAATGTCCCAGAATGTTTGCACCATTCGCCCTCTCGTTGTTGCTTTGTCATTTCATCAGATTTTCGAAGGCTTAGGTCTTGGTGGTTGCATTGCTCAGGCAGGGTTTGGATTTGGAACAACTGCATACATGTGTTTTATGTTCTCTGTGACAACACCAGTGGGAATAATTTTGGGGATGGTGTTGTTCTCAGTGACTGGTTATGATGATAGTAACCCAAAAGCTTTGATCATGGAAGGATTACTGGGTTCAGTTTCTTCAGGAATACTGATTTACATGGCTCTTGTTGATCTCATAGCAGTTGATTTCTTTCATAACAAGCTCATGAACTCCAATTTGTCGCTCAAAAAATTCTCTTTTCTTGCTTTAACTCTTGGCTCTGCTTCTATGTCAGTTCTCGCACTTTGGGCCTGA 1161 0.4556 MHFYESMDFRFSTPNHPPIENILGGKLNVWDLFSKRKHTKSKLKHHFISLSELFLGILLIMAECVTDMAQAALCRNSTAAAHLKLISIFTIFVTSVMGVSMPVMLARYFQGKSLYDIAILVIKCFAAGVILATSLVHVLPDAFAALSDCQVASQHPWKDFPFAGLVTLGGVLLALLVDTVASSHVEHTHYTPVETEEKEGGARSLSIELVSGGGEADRVEELMRLKQKLVSQVLEIGIIFHSVIIGVTMGMSQNVCTIRPLVVALSFHQIFEGLGLGGCIAQAGFGFGTTAYMCFMFSVTTPVGIILGMVLFSVTGYDDSNPKALIMEGLLGSVSSGILIYMALVDLIAVDFFHNKLMNSNLSLKKFSFLALTLGSASMSVLALWA* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0426 386 PANTHER ZINC/IRON TRANSPORTER 63 386 - -
Vra10g0426 386 TIGRFAM zip: ZIP zinc/iron transport family 69 386 IPR004698 GO:0005385|GO:0016021|GO:0071577
Vra10g0426 386 Pfam ZIP Zinc transporter 82 383 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Vra10g0426 386 PANTHER ZINC TRANSPORTER 6, CHLOROPLASTIC 63 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0426 Vra-Chr10 9830948 9832511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0426 61 386 Inorganic Solute Cotransporters AT2G30080 65.130 1.22e-152 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0426 K14709 - gmx:100784745 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0426 10 9830948 9832511 Vra10g0426 10 9830948 9832511 ECH
Vra6g1105 6 17240514 17242864 Vra10g0426 10 9830948 9832511 ECH