Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0424 ATGCCAACCCAACCTGACTCGCCCAACACGTTGACCCAAATGTTTCAGAACATCTTCTCAGACAACAGTAACATCATGCTTGCAGCCATCATTTCCCTTCTCCTTGTCATCCTCTTTGTCCTCCTTCTACACCTCTATGCCAGATGGTTCCTTGCTCAGGCACAGGCTCAGGCGCACGCCCGCCGCCGACGCCGCCGCCGCCGCCGAACGACGGTGACCGTCTCCGACGTCCTTGGCCCGGCTAGGTTCCACCAGTTCCACAGCTTCAACATAGAAGACTCCTCACCCCTCTCAACCAAAGGCCTGGATTCTTCCACCATTAGAGCAATTCCTCTCTTCATCTACGAGCATAACAACAGGGCCAAAGAAGATGAAGAACTTGAATGTGTGATTTGTTTGAGTGCCTTTGAGGGTGGTGAAGTGGGAAGGTGTTTGCCAAAGTGTGGCCATGGTTTTCATGTGGAGTGCATTGACATGTGGTTGAGTTCACACTCCAATTGTCCTATTTGTAGAGCCCCCATTGTAGTAAATGTTGTTGAGATCGATTCTTCTCAGGTTGTGTCTTCAAGAGATCATGGTGCTGAATATGGTGGTTCTGATTTTGAGATTGTGGTTGATGCTGGTTCCGATGAGACTAGAGAGAGTGATCACGGGAATGGTAATGGTAATGGAGGAGCAAGAACAAGTGTTTCTCTGTCAGAAACTTCTTCCTCGTTTTTGGGGTGCTCTTTGGAGAGAATGCTTGGCAAGGTTTTCCCATCGGCTAATTAA 771 0.4903 MPTQPDSPNTLTQMFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYARWFLAQAQAQAHARRRRRRRRRTTVTVSDVLGPARFHQFHSFNIEDSSPLSTKGLDSSTIRAIPLFIYEHNNRAKEDEELECVICLSAFEGGEVGRCLPKCGHGFHVECIDMWLSSHSNCPICRAPIVVNVVEIDSSQVVSSRDHGAEYGGSDFEIVVDAGSDETRESDHGNGNGNGGARTSVSLSETSSSFLGCSLERMLGKVFPSAN* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0424 256 SMART ring_2 129 170 IPR001841 -
Vra10g0424 256 Pfam Ring finger domain 128 171 IPR001841 -
Vra10g0424 256 PANTHER - 1 255 - -
Vra10g0424 256 SUPERFAMILY RING/U-box 118 177 - -
Vra10g0424 256 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Vra10g0424 256 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 255 IPR044675 -
Vra10g0424 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 176 IPR013083 -
Vra10g0424 256 CDD RING-H2_EL5_like 128 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0424 Vra-Chr10 9811029 9812523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0424 17 223 Rapid Response to Elicitors AT3G16720 32.367 1.52e-31 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0424 - - pvu:PHAVU_006G070000g 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0424 10 9811029 9812523 Vra10g0424 10 9811029 9812523 ECH