Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0418 ATGGTTTCTACTTGGGTAAGAGGCAAGTGCATAGGCAAGGGCGCGTTTGGCACCGTCAGCGTCGCGCTTCGAAAGCTTGACGCCCAGACGCAAATTTTCGCGGTGAAGTCTGTGGATATTAAAACGGGTCTCCCGGGTCAGCTCGAAGCGTTGGAGAACGAAATTCGGATCCTCCGACGCATGTCCTCGCCGCACGTGGTGACCTTTCTCGGCGAAGACACCACATGCGAGAAGCGGAACCTTCACATGGAGTACTTGCCATGTGGCACTCTCGCTGACCTGGACCCCGACGTGGACGAGTATTTAGTGAGACAATACACGTGGTGCTTGGTGAGCGCTCTGAAGCACGTGCACGGAAACGGCGTCGTGCACTGCGACGTGAAGGGGAAGAACGTCCTTGTAGGAGATGGAGCCAACGGTCGTAACTGCAAGCTCGCCGACTTCGGCTCGGCGATGGAGTTCGACGGGGAAGGACTTCCGGCGGCATCGCCGCGCGGGAGTCCTCTGTGGATGGCGCCGGAAGTGATACGCCGGGAGTGTCAGGGTCCGGCGTCGGACGTTTGGTCGTTAGGTTGCACGATGATCGAGATGCTCACCGGGAAACCGCCGTGGGAGGGGAACTCCGTGGACGCGCTGAGTCGGATTGGATTCTCCGGCGAGGTGCCGGGGTTTCCGCGCCGGTTATCGGAGCTCGGCCGGGATTTTCTGGAGAAGTGTTTGAGGAGGGAGCCGTGGCGGCGGTGGAGCTGCGATCAACTGCTGGAGCATCCGTTTCTGTTACCGTGTGGTGTGATCGTGGAATGGTCGCCTCGGTGCGTTCTCGACCGAGTTGACTCGGAGTTCGCTGAGTTCGACGAGGAAGAAGAACAGGAAGAAGAAGAAATGATAACTGAAAGTGAAAATTCGGCGAGGGATAGAATTGGAAATTTGGCTACCAGCGTAGGGGTAAATTGGGAAGCGCCAGGATGGATGATGGTGAGGGAATTGGCTTTCGATGCCGAACCGGTGGTGGCTGACAGTTCTGAGAACGTTAGAGAAGGGCTGATTTTGGAAAATTTTGAGAATTTGAGGGCAGAACGGGGAATTCAGGAAAGGAGAAATTGGGAATGTGAAAGCTTGAAAAAGGAAATGGTAAAATTGGGAATGTGGTGTTTGGGTGGGAGGCGGTGGTTGTTACAGTACAACCGGCGCAGCGAGTGTGAGTGTGGGTGGGAAAATGTTGATAAGAAAAAAAGAATGATATTGAAAATAAAGATTTACAAGTTGTACTTTAAATTATTGAAATCACATTGTTTGTATTTGAAGTATTTAAACATATATTATTTATGTTTTGAGTTGAGAATTTTTGTAATCAGAGTATATTTGTAA 1368 0.519 MVSTWVRGKCIGKGAFGTVSVALRKLDAQTQIFAVKSVDIKTGLPGQLEALENEIRILRRMSSPHVVTFLGEDTTCEKRNLHMEYLPCGTLADLDPDVDEYLVRQYTWCLVSALKHVHGNGVVHCDVKGKNVLVGDGANGRNCKLADFGSAMEFDGEGLPAASPRGSPLWMAPEVIRRECQGPASDVWSLGCTMIEMLTGKPPWEGNSVDALSRIGFSGEVPGFPRRLSELGRDFLEKCLRREPWRRWSCDQLLEHPFLLPCGVIVEWSPRCVLDRVDSEFAEFDEEEEQEEEEMITESENSARDRIGNLATSVGVNWEAPGWMMVRELAFDAEPVVADSSENVREGLILENFENLRAERGIQERRNWECESLKKEMVKLGMWCLGGRRWLLQYNRRSECECGWENVDKKKRMILKIKIYKLYFKLLKSHCLYLKYLNIYYLCFELRIFVIRVYL* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0418 455 Coils Coil 274 294 - -
Vra10g0418 455 Pfam Protein kinase domain 7 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0418 455 SMART serkin_6 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0418 455 CDD STKc_MAPKKK 5 259 - -
Vra10g0418 455 ProSiteProfiles Protein kinase domain profile. 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra10g0418 455 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 3 356 - -
Vra10g0418 455 ProSitePatterns Protein kinases ATP-binding region signature. 11 36 IPR017441 GO:0005524
Vra10g0418 455 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 356 - -
Vra10g0418 455 SUPERFAMILY Protein kinase-like (PK-like) 3 270 IPR011009 -
Vra10g0418 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Vra10g0418 455 Gene3D Transferase(Phosphotransferase) domain 1 1 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0418 Vra-Chr10 9740075 9741960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0418 5 334 MAP Kinase Kinase Kinase AT2G30040 58.580 1.85e-120 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vra10g0418 Pkinase 1.6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0418 - - gmx:100818366 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0418 10 9740075 9741960 Vra10g0418 10 9740075 9741960 ECH