Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0417 ATGATAACCGAAACAAAACTCAAACACAGTTTTCTTGAAGAACAGGAAGAAGAACAAGAATCTGCACAGTGCCAACGTTGTTGTCGCAATATGTCTTGTTTCGTAGCAGTTCCTAATTCCCCCGTGTTCTCTCTCTTCAACAACAACACCAACAACAATAACTCTTCTTCCATGACAGAACCTCTCATGCTTTCTCTTCCCATTCCCTCGACCACACCCTCTTGCTCCTCTCCTCCTTCCTCTCCCCTGTTGAAGCGAAGAAGACCTGCAAAACTCGACATTCCCGTCGCTTCTCTCTCACTGACGCTCTCGACGGCGCCGGCGCCGTCTCCGGCGATGGACTCGGTCATCGAGGTCGACGGAAGCGGGTTTTCTGTGTTCTGCAGACGAGGAAGGAGGGCCCACATGGAGGACCGTTACTCCGCTGCCGTTGATCTTCGCGGTGAACCCAAGCAGGCTTTCTTCGGCATATTCGATGGGCATGGAGGCACAAAAGCTTCGGAATTCGCTGCACATAACTTGGAGAAGAATGTGTTGGATGAGGTGGTTAGGAGAGATGAAAGTGACATTGAGGAGGCAGTGAAACATGGTTACCTCAACACAGATTCTGAATTCTTGAAGGAGGATCTTCATGGTGGCTCTTGCTGTGTGACAGCATTGATATGGAATGGCAACCTTGTTGTCTCTAACGTTGGGGATTGTCGTGCTGTGATTAGCAGAGGCGGGGTGGCAGAAGCCCTCACATCTGATCACAGGCCGTCAAGGGAAGATGAAAGGGACAGAATTGAAACTCAGGGTGGCTATGTTGATATGTGCCGTGGTGTGTGGAGGATCCAAGGGTCATTGGCTGTTTCAAGGGGAATTGGAGATAGGAACCTGAAACAATGGGTGATAGCAGAACCTGAGACCAAAGTTCTTAAAATTGAACCTCTGCATGACTTGTTGATCTTAGCTTCAGATGGCTTATGGGAAAAGGTTAGCAATCAGGAAGCAGTGGATATTGCTGGTCCTTTTTGTGTAGGTAACAACAGACAACAACCTTTGCAGGCTTGTAAGAAGCTCGTAGATTTATCTGTGTCGCGAGGTTCTGTGGATGATATAAGTGTTATGATCATCAAGTTGCAAAACTATGTTTGA 1137 0.4793 MITETKLKHSFLEEQEEEQESAQCQRCCRNMSCFVAVPNSPVFSLFNNNTNNNNSSSMTEPLMLSLPIPSTTPSCSSPPSSPLLKRRRPAKLDIPVASLSLTLSTAPAPSPAMDSVIEVDGSGFSVFCRRGRRAHMEDRYSAAVDLRGEPKQAFFGIFDGHGGTKASEFAAHNLEKNVLDEVVRRDESDIEEAVKHGYLNTDSEFLKEDLHGGSCCVTALIWNGNLVVSNVGDCRAVISRGGVAEALTSDHRPSREDERDRIETQGGYVDMCRGVWRIQGSLAVSRGIGDRNLKQWVIAEPETKVLKIEPLHDLLILASDGLWEKVSNQEAVDIAGPFCVGNNRQQPLQACKKLVDLSVSRGSVDDISVMIIKLQNYV* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0417 378 ProSitePatterns PPM-type phosphatase domain signature. 154 162 IPR000222 GO:0043169
Vra10g0417 378 CDD PP2Cc 123 374 IPR001932 -
Vra10g0417 378 PANTHER PROTEIN PHOSPHATASE 2C 34 377 IPR015655 GO:0004722|GO:0006470
Vra10g0417 378 MobiDBLite consensus disorder prediction 56 84 - -
Vra10g0417 378 SUPERFAMILY PP2C-like 123 376 IPR036457 -
Vra10g0417 378 Gene3D - 123 377 IPR036457 -
Vra10g0417 378 ProSiteProfiles PPM-type phosphatase domain profile. 123 374 IPR001932 -
Vra10g0417 378 SMART PP2C_4 113 372 IPR001932 -
Vra10g0417 378 MobiDBLite consensus disorder prediction 56 81 - -
Vra10g0417 378 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 34 377 - -
Vra10g0417 378 Pfam Protein phosphatase 2C 124 367 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0417 Vra-Chr10 9727626 9730077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0417 31 378 PP2C-type Phosphatase Gene Family AT2G30020 56.533 7.38e-142 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0417 K17506 - gmx:100779913 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0417 10 9727626 9730077 Vra10g0417 10 9727626 9730077 ECH
Vra6g1098 6 17093217 17095662 Vra10g0417 10 9727626 9730077 ECH