Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra10g0412 ATGGTGCTAACGAAAGGTCTTGATAATGGGAGCAGAAAGCGCAAACGACAGCCTTCAAGACAGCCTTCAAGAAAGCTTGGAGTGGATACAAAAGTGGAGGTGCGGAGTATGGACAACGGGTTTGAAGGATCGTGGCACCCTGGGACAGTTATCATGTGTGAGGATTTGCAACGGCGTGTCAGATATAACAATATTTTGGATAACAAGGGGGTGTATAATCTTGAGGAGGTGGTGATTGTTTCAAAAGCTTTGGACGGTGATAATGAATGTGCAGACATCTATGCACGCGGGTTCATTAGGCCACTGCCTCCTTTGGTTGAGTTTGATATGGGGGACCTTGTATATGGTTTATGTGTTGATGTGAACCATGAGGAAGCTTGGTGGGAAGGAGTTATATTTGACTACTGTGATGGAATGGACAAGAGGAGTGTGTTTTTCCCTGATTTGGGTGATGAAATACCGGTTGAAATTCATCAGTTGCGGATTACCCAGGACTGGGATGAAATTACCGAGGAATGGACCCGACGAGGGAACTGGGTGTTTCTTGATCTGTTGGAGGAGCAGAAGAGGAACTTGTTTATCACAGTTTCGACCAAGCAGATTTGGTATGATATACGCATTAGAAAGGAATTTGAGACGATTAGAGAGTGGACATGTAATTTGAAGTACTTGTGGACCGAGTTGATAAAGGAGATAATTAATCACTACTTATCTCTAACGTTAAAGGAAATTATCTCTGTCCTAAGCCTTCCTCGGAGTCTTTTAAATGAAACACCAGATCATGAATTTGCTGAAGCTATGCCTAATGTTGACTTAAGCATGATCTGGCATAATAAGCAAACTGTTGTGCAGAAAGGAACTGTCCCTCGTATTCAAGGGACCTTATCTGACGTTCAAAATGAAATTAGACCCTGTGGTGATAGTCCTTTGGATGAAAGCGGAGAAGATAGATCCTCAAGTCATTTAATGTCCTCTTTTTGGAGTCCTGTGAAGTTGTCTGGGGTTGAATTATGCCCTGATGCTGTTAGGGAATATCCACTTGCTTCCAAACGTGAAGCCAGGGCATTTTGGATGGACAAATTACAAAAGCATCTTGTATGTCTTGGATGGAAAATTGAATGGTCAAATAGATTAAATATTAAACGTTACAAGTATATTCCCCCTTATACGAAGGGCCCAAAGCGTTACCTTTCACTCATTGAAGTTTGTAAAGCTATGAAACAGGACCCCAACATGAACTCCTTGCCTCTCCAAAATGATCAGACCATAACGCATCCTACAGTTGATTTCCATCTTTCAGATGTGCCTTCTATTCCAGCTGAAAATATTCAGTCTATAACGGATCTCCAAAATGATCACACTAGAATGCATCCTACAGTTGATTGTCCTCTTTCAGATGTGCCTTCTATTCCAGCTGAAAATATTCAGTCTGTAACGCATCTTCAAAATGATCACACTATAATGCATCCTACAGTTGATTGTCATCTTTCAGATGTGCCTTCTACTCCAGCTGAAAATATTCAGTCTATAACGCATCTCCAAAATGATCACACTATGATGCATCCTACAGTTGATTGTCATCTTTCAGATGTGCCATCTATTCCAGCTGAAAATGTTCAGTCTATAATGCATCTCCAAAATGATCACACTATAATGCATCCTACAGATGATTGTCATCTTTCAGATGAGCCTTCTATTCCAGCTGAAAATATTCAGTCTATAACGCATCTCCAAAATGATCACACTATAATGCATCCTACAGTTGATTGTCATCTTTCAGATGTGCCTTCCGTTCCAGCTGAAAATATTCAGTCTATAACGCATCTCCAAAATGATCACACTATAATTCATCCTACAGTTGATTGTCACCTTTCTGATGTGCCTTCTAATCCAGCTGAAAATATTCAGAATCTAGATATCATTCCTCCAGCTGAAAATATTCAGAATCTAGACATCTTTCCTCCTGTTGAAAATATTCAGAATCTAGATATTTTTCCTCCTGCTGAAAATATTCAGAATCTAGATATCTTTCCTCCTGCTGAAAATATTCAGAATCTAGATATCTTTCCTCCTGCTGTGCCATCTTCTCCAGTTGAAGATGAAGTTGAAGAAGTACCTGAGTATTGTCCTCGGGCTGTTGTGCAGTATTATCGCATGTATATATACAAGAAGAGCCGGGCTGATAAAAAAAAGTGGATACTAAAGGCAAAGAAGCATCTGTTATCAGAGGGATGGGTTTTAGACCATCCACCTCCATTTAATAAGAAAAGGGGAATAATATACATGTCTCCACAAAATCGGAAATTCCCAACACTCCATGCAGCATGCAAATTTTGCATTGAAGAGACTATTCCTAATTGGAACCTTGAATGGCAGGAGATTGATGAAGGTGCTTCTGGTATTAAACCAACTACAAATCAAAAGAAGAAAAACAAGAGGGATTTGAAGGCCAACACACCCAAGGGCCAAAGCAATGGACCTCGACAGGTGCTAAGATCAAATAAGAGGGTGCAAAAGGTGTCTGTCTCTACTCATTTACATCATAAGCCTCTAAACATTCCGTCTTATTTGATAGACAGCAACATCATCTTACCAAGGTCTAAGGTTTACTATAAGGCAAAAGGCACGAACCGTGCAGTCCGAACTTTGGCTGAGGGGAAAATAACTCATGATGGAATCAAGTGTAACTGTTGTCTTACAATATACAGTTTTGTTGGATTTGAAAAACATGCTACTGGCAGTAGTACCTGCAGACCCTCTGCTAATATCTTTTTGGATGATGGGAAGTCACTCTTGGACTGCCAGATACAAATGATGCAAGGTCAAAAGAATAGTGTAGCCAGTGGAAAAGCATTAAGTGATCTGTCTCTAGCTGATAATGACTACATTTGTTCAGTTTGTCGCTATGGTGGTGAACTTATTTTATGTGATAAATGTCCATCCTCATTCCATAAGACGTGTCTTGGTTTGGAGGATGTCCCTGAAGGTGACTGGTTTTGTCCATCATGTCGTTGCGGGATTTGTGGCCAAAGGAAAATTGATGGAGATGAGGTTGAACACTTCCTTTCTTGCATACAATGTGAACATAAATATCATGTTAGGTGCCTGAAAAATGGAGCTGCAAATACATCAAGATATAATGGAAACTGGTTCTGTGGAAAAGACTGTGAAAAGATATACGAGGGCCTTCATAAGTTATTAGGAGAGCCAACTCCAGTGGCTAGCAATCTAACTTGGACTTTGGTGAAGTTTATCAACCCTGACAGTTGTGATCTTGGTAATGTTGAACGTGACTTAGTGGCAGAAAGTTACTGCAAACTCAGTCTTGCTCTTTCGTTGATGCATGAATGTTTTGAGCCCCTAAAAGAACCCTTGACTTCCAGAGATCTCGTGGAAGATGCTCTATTCAGCAGAAGGTCAGAGCTTAACCGAATAAATTTCCAGGGTTTCTACACTGTGCTACTTGAGAGAAATGAAGAACTGGTTAGTGTGGCAACTGTTAGGGTCCATGGGAAGAAGGTAGCTGAAATACCTCTTGTTGGTACCAGATTACAATATCGTCGACATGGAATGTGTCGCATTTTAGTAAATGAGCTTGAAAAGAAGCTCATGAAATTAGATGTGGAGAGGCTGGTTTTGCCGGCTGTTCCTAGTGTGCTAGAGACATGGACCGGCTCTTTTGGCTTTGCAAAGATGACTGATTATGAGAGATCTCAGTTTCTGGACTATACTTTCCTAGATTTTGAGGGTACCATTATGTGCCAAAAGTTGTTGATGAACATTGCATCTTCAGATTCAGTTCCGTTAATAGAGTCTGAACGTTGCTGTTTTAACCCCAGTAAGTCTGGTCCTGTATGTGAAGTGCACCCAGTAGAAGCTATTGACGAAAATGCTTGTGCTGGCAATAATGATCACCATGATTTAAGAGCTATTGACCCATTTAGAATGGTGAAGGAACCGGATCAACAGTGTCAGAAAGGAACAACCAGTAGTGTGTGCTCTTTTGATGAACTAGTTGAAAGGAATGATGATGATCTGTATAAGTTTGTCTACACACGAAAGAAAATGAGAAAATCATACCAAGGGATTTAG 4092 0.4044 MVLTKGLDNGSRKRKRQPSRQPSRKLGVDTKVEVRSMDNGFEGSWHPGTVIMCEDLQRRVRYNNILDNKGVYNLEEVVIVSKALDGDNECADIYARGFIRPLPPLVEFDMGDLVYGLCVDVNHEEAWWEGVIFDYCDGMDKRSVFFPDLGDEIPVEIHQLRITQDWDEITEEWTRRGNWVFLDLLEEQKRNLFITVSTKQIWYDIRIRKEFETIREWTCNLKYLWTELIKEIINHYLSLTLKEIISVLSLPRSLLNETPDHEFAEAMPNVDLSMIWHNKQTVVQKGTVPRIQGTLSDVQNEIRPCGDSPLDESGEDRSSSHLMSSFWSPVKLSGVELCPDAVREYPLASKREARAFWMDKLQKHLVCLGWKIEWSNRLNIKRYKYIPPYTKGPKRYLSLIEVCKAMKQDPNMNSLPLQNDQTITHPTVDFHLSDVPSIPAENIQSITDLQNDHTRMHPTVDCPLSDVPSIPAENIQSVTHLQNDHTIMHPTVDCHLSDVPSTPAENIQSITHLQNDHTMMHPTVDCHLSDVPSIPAENVQSIMHLQNDHTIMHPTDDCHLSDEPSIPAENIQSITHLQNDHTIMHPTVDCHLSDVPSVPAENIQSITHLQNDHTIIHPTVDCHLSDVPSNPAENIQNLDIIPPAENIQNLDIFPPVENIQNLDIFPPAENIQNLDIFPPAENIQNLDIFPPAVPSSPVEDEVEEVPEYCPRAVVQYYRMYIYKKSRADKKKWILKAKKHLLSEGWVLDHPPPFNKKRGIIYMSPQNRKFPTLHAACKFCIEETIPNWNLEWQEIDEGASGIKPTTNQKKKNKRDLKANTPKGQSNGPRQVLRSNKRVQKVSVSTHLHHKPLNIPSYLIDSNIILPRSKVYYKAKGTNRAVRTLAEGKITHDGIKCNCCLTIYSFVGFEKHATGSSTCRPSANIFLDDGKSLLDCQIQMMQGQKNSVASGKALSDLSLADNDYICSVCRYGGELILCDKCPSSFHKTCLGLEDVPEGDWFCPSCRCGICGQRKIDGDEVEHFLSCIQCEHKYHVRCLKNGAANTSRYNGNWFCGKDCEKIYEGLHKLLGEPTPVASNLTWTLVKFINPDSCDLGNVERDLVAESYCKLSLALSLMHECFEPLKEPLTSRDLVEDALFSRRSELNRINFQGFYTVLLERNEELVSVATVRVHGKKVAEIPLVGTRLQYRRHGMCRILVNELEKKLMKLDVERLVLPAVPSVLETWTGSFGFAKMTDYERSQFLDYTFLDFEGTIMCQKLLMNIASSDSVPLIESERCCFNPSKSGPVCEVHPVEAIDENACAGNNDHHDLRAIDPFRMVKEPDQQCQKGTTSSVCSFDELVERNDDDLYKFVYTRKKMRKSYQGI* 1364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra10g0412 1363 MobiDBLite consensus disorder prediction 798 835 - -
Vra10g0412 1363 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1137 1239 IPR016181 -
Vra10g0412 1363 Gene3D - 1105 1235 - -
Vra10g0412 1363 MobiDBLite consensus disorder prediction 818 835 - -
Vra10g0412 1363 SUPERFAMILY FYVE/PHD zinc finger 951 1004 IPR011011 -
Vra10g0412 1363 SMART PHD_3 963 1004 IPR001965 -
Vra10g0412 1363 SMART PHD_3 1005 1056 IPR001965 -
Vra10g0412 1363 PANTHER PHD ZINC FINGER PROTEIN 810 1267 - -
Vra10g0412 1363 PANTHER PHD ZINC FINGER PROTEIN 668 788 - -
Vra10g0412 1363 PANTHER PHD ZINC FINGER PROTEIN 5 445 - -
Vra10g0412 1363 CDD NAT_SF 1153 1213 - -
Vra10g0412 1363 Pfam Agenet domain 30 104 IPR008395 -
Vra10g0412 1363 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1097 1247 IPR000182 GO:0016407
Vra10g0412 1363 SMART ring_2 1005 1055 IPR001841 -
Vra10g0412 1363 SMART ring_2 964 1003 IPR001841 -
Vra10g0412 1363 Pfam PHD-finger 963 1005 IPR019787 -
Vra10g0412 1363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1005 1059 IPR013083 -
Vra10g0412 1363 SMART agenet_At_2 24 86 IPR014002 -
Vra10g0412 1363 SMART agenet_At_2 111 168 IPR014002 -
Vra10g0412 1363 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 810 1267 - -
Vra10g0412 1363 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 668 788 - -
Vra10g0412 1363 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 5 445 - -
Vra10g0412 1363 Pfam Tify domain binding domain 886 938 IPR032308 -
Vra10g0412 1363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 955 1004 IPR013083 -
Vra10g0412 1363 ProSiteProfiles Zinc finger PHD-type profile. 961 1006 IPR019787 -
Vra10g0412 1363 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra10g0412 Vra-Chr10 9634428 9645901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra10g0412 35 442 PHD Transcription Factor Family AT5G58610 34.009 3.83e-61 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra10g0412 Agenet 2.2e-13 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra10g0412 - - vra:106774781 2813.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra10g0412 10 9634428 9645901 Vra10g0412 10 9634428 9645901 ECH